Department of Chemistry, Chemical Biology, and Biomedical Engineering, Stevens Institute of Technology, Hoboken, New Jersey 07030, USA.
J Chem Phys. 2010 Jul 28;133(4):044904. doi: 10.1063/1.3457161.
We have calculated the hydrodynamic radius R(h) and intrinsic viscosity [eta] of both lattice self-avoiding rings and lattice theta-state rings that are confined to specific knot states by our path-integration technique. We observe that naive scaling arguments based on the equilibrium polymer size fail for both the hydrodynamic radius and the intrinsic viscosity, at least over accessible chain lengths. (However, we do conjecture that scaling laws will nevertheless prevail at sufficiently large N.) This failure is attributed to a "double" cross-over. One cross-over effect is the transition from delocalized to localized knotting: in short chains, the knot is distributed throughout the chain, while in long chains it becomes localized in only a portion of the chain. This transition occurs slowly with increasing N. The other cross-over, superimposed upon the first, is the so-called "draining" effect, in which transport properties maintain dependence on local structure out to very large N. The hydrodynamic mobility of knotted rings of the same length and backbone structure is correlated with the average crossing number X of the knots. The same correlation between mobility and knot complexity X has been observed for the gel-electrophoretic mobility of cyclic DNA molecules.
我们使用路径积分技术,计算了受限在特定纽结状态下的晶格自回避环和晶格 theta 态环的流体力学半径 R(h)和本征黏度 [eta]。我们发现,基于平衡聚合物尺寸的简单缩放论点至少在可访问的链长范围内,对于流体力学半径和本征黏度都不适用。(然而,我们确实推测,在足够大的 N 时,缩放定律仍然会成立。)这种失败归因于“双重”交叉。一种交叉效应是从无规到局部纽结的转变:在短链中,纽结分布在整个链中,而在长链中,它只在链的一部分中局部化。这种转变随着 N 的增加而缓慢发生。另一个交叉是所谓的“排水”效应,它叠加在第一个交叉之上,在这种效应中,输运性质在很大的 N 范围内仍然依赖于局部结构。具有相同长度和主链结构的纽结环的流体力学迁移率与纽结的平均交叉数 X 相关。对于环状 DNA 分子的凝胶电泳迁移率,也观察到了迁移率和纽结复杂度 X 之间的相同相关性。