金黄色葡萄球菌 JKD6159 菌株的全基因组序列，该菌是独特的澳大利亚 ST93-IV 型社区耐甲氧西林金黄色葡萄球菌克隆。
Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus.
机构信息
Department of Microbiology, Monash University, Melbourne, Victoria, Australia.
出版信息
J Bacteriol. 2010 Oct;192(20):5556-7. doi: 10.1128/JB.00878-10. Epub 2010 Aug 20.
Abstract
Community methicillin-resistant Staphylococcus aureus (cMRSA) is an emerging issue that has resulted in multiple worldwide epidemics. We report the first complete genome sequence of an ST93-MRSA-IV clinical isolate that caused severe invasive infection and a familial outbreak of skin infection. This isolate is a representative of the most common Australian clone of cMRSA that is more distantly related to the previously sequenced genomes of S. aureus.
摘要
社区耐甲氧西林金黄色葡萄球菌（cMRSA）是一个新出现的问题，已导致多次全球流行。我们报告了首例 ST93-MRSA-IV 临床分离株的全基因组序列，该分离株引起严重侵袭性感染和家族性皮肤感染暴发。该分离株是澳大利亚最常见的 cMRSA 克隆的代表，与之前测序的金黄色葡萄球菌基因组关系较远。
相似文献
1
Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus.金黄色葡萄球菌 JKD6159 菌株的全基因组序列，该菌是独特的澳大利亚 ST93-IV 型社区耐甲氧西林金黄色葡萄球菌克隆。
J Bacteriol. 2010 Oct;192(20):5556-7. doi: 10.1128/JB.00878-10. Epub 2010 Aug 20.
2
The dominant Australian community-acquired methicillin-resistant Staphylococcus aureus clone ST93-IV [2B] is highly virulent and genetically distinct.优势澳大利亚社区获得性耐甲氧西林金黄色葡萄球菌克隆 ST93-IV [2B] 具有高度毒性和遗传上的独特性。
PLoS One. 2011;6(10):e25887. doi: 10.1371/journal.pone.0025887. Epub 2011 Oct 3.
3
Whole genome sequencing to investigate a putative outbreak of the virulent community-associated methicillin-resistant ST93 clone in a remote Indigenous community.全基因组测序调查偏远土著社区中一种致命的社区相关耐甲氧西林金黄色葡萄球菌 ST93 克隆的疑似暴发。
Microb Genom. 2016 Dec 12;2(12):e000098. doi: 10.1099/mgen.0.000098. eCollection 2016 Dec.
4
Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage.美国300社区获得性耐甲氧西林金黄色葡萄球菌谱系的人口统计学及洲际传播情况
mBio. 2016 Feb 16;7(1):e02183-15. doi: 10.1128/mBio.02183-15.
5
Australian Group on Antimicrobial Resistance (AGAR) Australian Staphylococcus aureus Sepsis Outcome Programme (ASSOP) Annual Report 2017.澳大利亚抗菌药物耐药性小组（AGAR）澳大利亚金黄色葡萄球菌败血症结局项目（ASSOP）2017年年报。
Commun Dis Intell (2018). 2019 Sep 16;43. doi: 10.33321/cdi.2019.43.43.
6
Molecular characteristics of community-acquired methicillin-resistant Staphylococcus aureus in Hokkaido, northern main island of Japan: identification of sequence types 6 and 59 Panton-Valentine leucocidin-positive community-acquired methicillin-resistant Staphylococcus aureus.日本北海道地区社区获得性耐甲氧西林金黄色葡萄球菌的分子特征： 6 型和 59 型 Panton-Valentine 白细胞毒素阳性社区获得性耐甲氧西林金黄色葡萄球菌的鉴定。
Microb Drug Resist. 2011 Jun;17(2):241-50. doi: 10.1089/mdr.2010.0136. Epub 2011 Mar 13.
7
The origin of a methicillin-resistant Staphylococcus aureus isolate at a neonatal ward in Sweden-possible horizontal transfer of a staphylococcal cassette chromosome mec between methicillin-resistant Staphylococcus haemolyticus and Staphylococcus aureus.瑞典一家新生儿病房中一株耐甲氧西林金黄色葡萄球菌分离株的起源——耐甲氧西林溶血葡萄球菌与金黄色葡萄球菌之间葡萄球菌盒式染色体mec可能的水平转移
Clin Microbiol Infect. 2008 Nov;14(11):1048-56. doi: 10.1111/j.1469-0691.2008.02090.x.
8
Genome sequence of Staphylococcus aureus strain 11819-97, an ST80-IV European community-acquired methicillin-resistant isolate.金黄色葡萄球菌 11819-97 株的基因组序列，该菌是一株 ST80-IV 型欧洲社区获得性耐甲氧西林金黄色葡萄球菌分离株。
J Bacteriol. 2012 Mar;194(6):1625-6. doi: 10.1128/JB.06653-11.
9
A comparative genomic analysis between methicillin-resistant Staphylococcus aureus strains of hospital acquired and community infections in Yunnan province of China.中国云南省医院获得性和社区感染耐甲氧西林金黄色葡萄球菌菌株的比较基因组分析。
BMC Infect Dis. 2020 Feb 13;20(1):137. doi: 10.1186/s12879-020-4866-6.
10
ST2249-MRSA-III: a second major recombinant methicillin-resistant Staphylococcus aureus clone causing healthcare infection in the 1970s.ST2249-MRSA-III：1970 年代引起医院感染的第二种主要的耐甲氧西林金黄色葡萄球菌重组克隆。
Clin Microbiol Infect. 2015 May;21(5):444-50. doi: 10.1016/j.cmi.2014.12.018. Epub 2015 Jan 28.
引用本文的文献
1
Hybracter: enabling scalable, automated, complete and accurate bacterial genome assemblies.Hybracter：实现可扩展、自动化、完整和准确的细菌基因组组装。
Microb Genom. 2024 May;10(5). doi: 10.1099/mgen.0.001244.
2
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies.Hybracter：实现可扩展、自动化、完整且准确的细菌基因组组装。
bioRxiv. 2024 Apr 11:2023.12.12.571215. doi: 10.1101/2023.12.12.571215.
3
Virulence attributes of successful methicillin-resistant lineages.耐甲氧西林金黄色葡萄球菌成功株系的毒力特征。
Clin Microbiol Rev. 2023 Dec 20;36(4):e0014822. doi: 10.1128/cmr.00148-22. Epub 2023 Nov 20.
4
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159.澳大利亚耐甲氧西林金黄色葡萄球菌菌株JKD6159的改进基因组序列
Microbiol Resour Announc. 2023 Feb 16;12(2):e0112922. doi: 10.1128/mra.01129-22. Epub 2023 Jan 18.
5
First Genome-Based Characterisation and Staphylococcal Enterotoxin Production Ability of Methicillin-Susceptible and Methicillin-Resistant Strains Isolated from Ready-to-Eat Foods in Algiers (Algeria).首份基于基因组的研究报告：对从阿尔及尔（阿尔及利亚）即食食品中分离的耐甲氧西林金黄色葡萄球菌和甲氧西林敏感金黄色葡萄球菌的特征分析，以及其肠毒素产生能力的研究。
Toxins (Basel). 2022 Oct 25;14(11):731. doi: 10.3390/toxins14110731.
6
Phylodynamic signatures in the emergence of community-associated MRSA.社区相关耐甲氧西林金黄色葡萄球菌出现的系统发育特征。
Proc Natl Acad Sci U S A. 2022 Nov 8;119(45):e2204993119. doi: 10.1073/pnas.2204993119. Epub 2022 Nov 2.
7
Staphylococcus aureus specific lung resident memory CD4 Th1 cells attenuate the severity of influenza virus induced secondary bacterial pneumonia.金黄色葡萄球菌特异性肺驻留记忆 CD4 Th1 细胞可减轻流感病毒诱导的继发性细菌性肺炎的严重程度。
Mucosal Immunol. 2022 Apr;15(4):783-796. doi: 10.1038/s41385-022-00529-4. Epub 2022 May 30.
8
Phylodynamic Inference of Bacterial Outbreak Parameters Using Nanopore Sequencing.使用纳米孔测序技术对细菌爆发参数进行系统发育动力学推断
Mol Biol Evol. 2022 Mar 2;39(3). doi: 10.1093/molbev/msac040.
9
Significant variability exists in the cytotoxicity of global methicillin-resistant lineages.全球耐甲氧西林金黄色葡萄球菌谱系的细胞毒性存在显著差异。
Microbiology (Reading). 2021 Dec;167(12). doi: 10.1099/mic.0.001119.
10
Global Scale Dissemination of ST93: A Divergent Epidemic Lineage That Has Recently Emerged From Remote Northern Australia.ST93的全球传播：一种最近从澳大利亚北部偏远地区出现的不同流行谱系。
Front Microbiol. 2018 Jul 9;9:1453. doi: 10.3389/fmicb.2018.01453. eCollection 2018.
本文引用的文献
1
A new generation of homology search tools based on probabilistic inference.基于概率推理的新一代同源性搜索工具。
Genome Inform. 2009 Oct;23(1):205-11.
2
Waves of resistance: Staphylococcus aureus in the antibiotic era.耐药浪潮：抗生素时代的金黄色葡萄球菌
Nat Rev Microbiol. 2009 Sep;7(9):629-41. doi: 10.1038/nrmicro2200.
3
Prevalence of MRSA strains among Staphylococcus aureus isolated from outpatients, 2006.2006年门诊分离的金黄色葡萄球菌中甲氧西林耐药金黄色葡萄球菌（MRSA）菌株的患病率。
Commun Dis Intell Q Rep. 2009 Mar;33(1):10-20.
4
SHRiMP: accurate mapping of short color-space reads.SHRiMP：短颜色空间读数的精确映射
PLoS Comput Biol. 2009 May;5(5):e1000386. doi: 10.1371/journal.pcbi.1000386. Epub 2009 May 22.
5
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
6
Genome sequencing in microfabricated high-density picolitre reactors.微制造高密度皮升反应器中的基因组测序
Nature. 2005 Sep 15;437(7057):376-80. doi: 10.1038/nature03959. Epub 2005 Jul 31.
7
Life-threatening community-acquired methicillin-resistant Staphylococcus aureus infection in Australia.澳大利亚危及生命的社区获得性耐甲氧西林金黄色葡萄球菌感染
Eur J Clin Microbiol Infect Dis. 2005 Jun;24(6):384-7. doi: 10.1007/s10096-005-1329-3.
8
Genetic diversity among community methicillin-resistant Staphylococcus aureus strains causing outpatient infections in Australia.澳大利亚引起门诊感染的社区耐甲氧西林金黄色葡萄球菌菌株的遗传多样性。
J Clin Microbiol. 2004 Oct;42(10):4735-43. doi: 10.1128/JCM.42.10.4735-4743.2004.
9
The COG database: an updated version includes eukaryotes.COG数据库：更新版本涵盖真核生物。
BMC Bioinformatics. 2003 Sep 11;4:41. doi: 10.1186/1471-2105-4-41.
10
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.GeneMarkS：一种用于预测微生物基因组中基因起始位点的自训练方法。对在调控区域中寻找序列基序的启示。
Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607.
Zotero 插件