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细菌游走脉冲的数学描述。

Mathematical description of bacterial traveling pulses.

机构信息

Physico-Chimie-Curie, Institut Curie, UMR CNRS 168, Paris, France.

出版信息

PLoS Comput Biol. 2010 Aug 19;6(8):e1000890. doi: 10.1371/journal.pcbi.1000890.

Abstract

The Keller-Segel system has been widely proposed as a model for bacterial waves driven by chemotactic processes. Current experiments on Escherichia coli have shown the precise structure of traveling pulses. We present here an alternative mathematical description of traveling pulses at the macroscopic scale. This modeling task is complemented with numerical simulations in accordance with the experimental observations. Our model is derived from an accurate kinetic description of the mesoscopic run-and-tumble process performed by bacteria. This can account for recent experimental observations with E. coli. Qualitative agreements include the asymmetry of the pulse and transition in the collective behaviour (clustered motion versus dispersion). In addition, we can capture quantitatively the traveling speed of the pulse as well as its characteristic length. This work opens several experimental and theoretical perspectives since coefficients at the macroscopic level are derived from considerations at the cellular scale. For instance, the particular response of a single cell to chemical cues turns out to have a strong effect on collective motion. Furthermore, the bottom-up scaling allows us to perform preliminary mathematical analysis and write efficient numerical schemes. This model is intended as a predictive tool for the investigation of bacterial collective motion.

摘要

凯勒-塞格尔系统已被广泛提出作为由趋化过程驱动的细菌波的模型。目前对大肠杆菌的实验已经显示出传播脉冲的精确结构。我们在这里提出了一种在宏观尺度上描述传播脉冲的替代数学方法。这个建模任务与根据实验观察进行的数值模拟相补充。我们的模型源自细菌进行的微观运行和翻转过程的精确动力学描述。这可以解释大肠杆菌的最新实验观察。定性一致性包括脉冲的不对称性和集体行为中的转变(聚集运动与分散)。此外,我们可以定量捕捉脉冲的传播速度及其特征长度。由于宏观水平的系数是从细胞水平的考虑得出的,因此这项工作开辟了几个实验和理论的视角。例如,单个细胞对化学信号的特殊反应对集体运动有很大的影响。此外,自下而上的缩放允许我们进行初步的数学分析并编写高效的数值方案。这个模型旨在作为研究细菌集体运动的预测工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5b55/2924242/8480fdd2a2b6/pcbi.1000890.g001.jpg

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