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具有多种可调功能的最小基因装置。

Minimal genetic device with multiple tunable functions.

作者信息

Bagh Sangram, Mandal Mahuya, McMillen David R

机构信息

Department of Chemical and Physical Sciences, Institute for Optical Sciences, University of Toronto Mississauga, Ontario, Canada.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Aug;82(2 Pt 1):021911. doi: 10.1103/PhysRevE.82.021911. Epub 2010 Aug 12.

Abstract

The ability to design artificial genetic devices with predictable functions is critical to the development of synthetic biology. Given the highly variable requirements of biological designs, the ability to tune the behavior of a genetic device is also of key importance; such tuning will allow devices to be matched with other components into larger systems, and to be shifted into the correct parameter regimes to elicit desired behaviors. Here, we have developed a minimal synthetic genetic system that acts as a multifunction, tunable biodevice in the bacterium Escherichia coli. First, it acts as a biochemical AND gate, sensing the extracellular small molecules isopropyl β-D -1-thiogalactopyranoside and anhydrotetracycline as two input signals and expressing enhanced green fluorescent protein as an output signal. Next, the output signal of the AND gate can be amplified by the application of another extracellular chemical, arabinose. Further, the system can generate a wide range of chemically tunable single input-output response curves, without any genetic alteration of the circuit, by varying the concentrations of a set of extracellular small molecules. We have developed and parameterized a simple transfer function model for the system, and shown that the model successfully explains and predicts the quantitative relationships between input and output signals in the system.

摘要

设计具有可预测功能的人工遗传装置的能力对于合成生物学的发展至关重要。鉴于生物设计的要求高度可变,调节遗传装置行为的能力也至关重要;这种调节将使装置能够与其他组件匹配成更大的系统,并转移到正确的参数范围以引发期望的行为。在此,我们开发了一种最小的合成遗传系统,它在大肠杆菌中作为一种多功能、可调节的生物装置发挥作用。首先,它作为一个生化与门,将细胞外小分子异丙基β-D-1-硫代半乳糖苷和脱水四环素作为两个输入信号进行感应,并将增强型绿色荧光蛋白作为输出信号进行表达。其次,与门的输出信号可以通过施加另一种细胞外化学物质阿拉伯糖进行放大。此外,通过改变一组细胞外小分子的浓度,该系统可以在不改变电路任何基因的情况下生成一系列化学可调的单输入-输出响应曲线。我们为该系统开发并参数化了一个简单的传递函数模型,并表明该模型成功地解释和预测了系统中输入和输出信号之间的定量关系。

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