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基于从头算自洽场和轨道电负性的电势依赖型部分均衡法对N-乙酰-N'-甲基丙氨酸酰胺水合性质的计算

Ab initio self-consistent field and potential-dependent partial equalization of orbital electronegativity calculations of hydration properties of N-acetyl-N'-methyl-alanineamide.

作者信息

Grant J A, Williams R L, Scheraga H A

机构信息

Baker Laboratory of Chemistry, Cornell University, Ithaca, New York 14853-1301.

出版信息

Biopolymers. 1990;30(9-10):929-49. doi: 10.1002/bip.360300908.

DOI:10.1002/bip.360300908
PMID:2092822
Abstract

Using a recently developed parallel computation algorithm, ab initio self-consistent field (SCF) calculations were carried out to estimate the relative hydration energies for 12 low-energy conformations of N-acetyl-N'-methyl-alanineamide. The requisite SCF calculations were carried out using 6-31G and 6-31G* basis sets, both in the absence and presence of a perturbing potential arising from a model solvent. The alpha R, alpha L, polyproline II (PII), and pi helical conformations were preferentially stabilized by the solvent potential, whereas conformations with intramolecular hydrogen-bonding C5 and C7 were preferred in the gas phase. Average vicinal nmr coupling constants (JNH-C alpha H), calculated using the total energies of the various solvated conformations, were consistent with observed coupling constants for this peptide in aqueous solution. Substantial alteration of the solute charge density occurred upon equilibration with the reaction field, as was exemplified in changes both in the molecular dipole moments and in atom-centered multipoles, when the molecule was transferred from a medium of low dielectric constant to one of high dielectric constant. In order to model these changes in charge density with an empirical scheme, we have implemented a novel monopolar representation of the solute charge density based on a potential-dependent form of partial equalization of orbital electronegativities (PDPEOE). In the atom-centered point charge PDPEOE representation, charge flows from one region of the solute to another in response to external fields. Hydration energies calculated using the PDPEOE representation are similar to those calculated by the SCF procedure. Also, the PDPEOE calculations yielded changes in molecular dipole moments upon solvation that agreed closely with the changes in the calculated ab initio SCF dipole moments.

摘要

使用最近开发的并行计算算法,进行了从头算自洽场(SCF)计算,以估计N-乙酰基-N'-甲基丙氨酸酰胺的12种低能构象的相对水合能。必要的SCF计算使用6-31G和6-31G*基组进行,分别在不存在和存在由模型溶剂产生的微扰势的情况下。αR、αL、多聚脯氨酸II(PII)和π螺旋构象优先被溶剂势稳定,而具有分子内氢键C5和C7的构象在气相中更受青睐。使用各种溶剂化构象的总能量计算得到的平均邻位核磁共振耦合常数(JNH-CαH)与该肽在水溶液中观察到的耦合常数一致。当分子从低介电常数介质转移到高介电常数介质时,溶质电荷密度在与反应场平衡时发生了显著变化,这在分子偶极矩和以原子为中心的多极矩的变化中都有体现。为了用经验方案模拟这些电荷密度变化,我们基于轨道电负性的势依赖形式的部分均衡(PDPEOE)实现了一种溶质电荷密度的新型单极表示。在以原子为中心的点电荷PDPEOE表示中,电荷响应外部场从溶质的一个区域流向另一个区域。使用PDPEOE表示计算得到的水合能与通过SCF程序计算得到的值相似。此外,PDPEOE计算得出的溶剂化后分子偶极矩的变化与从头算SCF偶极矩计算中的变化非常吻合。

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