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元基因组时代的生物催化剂鉴定

Metagenomic era for biocatalyst identification.

机构信息

Department of Applied Biocatalysis, Institute of Catalysis, CSIC, Madrid, Spain.

出版信息

Curr Opin Biotechnol. 2010 Dec;21(6):725-33. doi: 10.1016/j.copbio.2010.09.006. Epub 2010 Oct 9.

Abstract

Microbial enzymes have many known applications as biocatalysts. However, only a few of them are currently employed for biocatalysis even though an annotated collection of more than 190 billion bases is available in metagenome sequence databases from uncultured and highly diverse microbial populations. This review aims at providing conceptual and technical bases for the translation of metagenome data into both experimental and computational frameworks that facilitates a comprehensive analysis of the biocatalysts diversity space. We will also briefly present the status of the current capabilities that assess and predict catalytic potential of environmental sites and track its diversity and evolution in large-scale biocatalysis process resulting from studies applying metagenomics in association with gene fingerprinting, catabolic arrays and complementary '-omics'.

摘要

微生物酶作为生物催化剂有许多已知的应用。然而,尽管在未培养的高度多样化的微生物群体的宏基因组序列数据库中可获得超过 1900 亿个碱基的注释集合,但目前只有少数几种微生物酶被用于生物催化。本综述旨在为将宏基因组数据转化为实验和计算框架提供概念和技术基础,从而促进对生物催化剂多样性空间的全面分析。我们还将简要介绍当前评估和预测环境部位催化潜力的能力状况,并跟踪其在大规模生物催化过程中的多样性和进化,这些过程是通过将宏基因组学与基因指纹图谱、代谢物阵列和互补的“组学”结合应用研究所产生的。

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