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HIV-1与宿主的相互作用:大规模数据集的整合

HIV-1 host interactions: integration of large-scale datasets.

作者信息

Telenti Amalio

机构信息

Institute of Microbiology, University Hospital Center, University of Lausanne Bugnon 48, 1011 Lausanne Switzerland.

出版信息

F1000 Biol Rep. 2009 Sep 28;1:71. doi: 10.3410/B1-71.

Abstract

HIV-1 replication and viral pathogenesis are dependent on numerous host factors. A series of recent papers apply genome-wide and large-scale approaches to map host-virus interactions and to identify host proteins capable of restricting (that is, controlling) the virus. Strategies include genome-wide association studies, small interfering RNA screens, genome-wide transcriptome profiling, proteome studies, and the assessment of the role of host-encoded microRNAs in infection. The various layers of large-scale data are brought together through meta-analytical procedures.

摘要

HIV-1复制和病毒发病机制依赖于众多宿主因子。最近一系列论文采用全基因组和大规模方法来绘制宿主-病毒相互作用图谱,并鉴定能够限制(即控制)病毒的宿主蛋白。策略包括全基因组关联研究、小干扰RNA筛选、全基因组转录组分析、蛋白质组研究,以及评估宿主编码的微小RNA在感染中的作用。通过荟萃分析程序将各个层面的大规模数据整合在一起。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6057/2948256/545afb6668e1/1757-594X-0001-0000000071-g001.jpg

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