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柠檬26S rRNA基因的核苷酸序列及其RNA的二级结构模型

Nucleotide sequence of Citrus limon 26S rRNA gene and secondary structure model of its RNA.

作者信息

Kolosha V O, Fodor I

机构信息

Department of Molecular Biology, USSR Academy of Sciences, Puschino.

出版信息

Plant Mol Biol. 1990 Feb;14(2):147-61. doi: 10.1007/BF00018556.

DOI:10.1007/BF00018556
PMID:2101688
Abstract

The complete nucleotide sequence of Citrus limon 26S rDNA has been determined. The sequence has been aligned with large ribosomal RNA (L-rRNA) sequences of Escherichia coli, Saccharomyces cerevisiae and Oryza sativa. Nine extensive expansion segments in dicot 26S rRNA relative to E. coli 23S rRNA have been identified and compared with analogous segments of monocot, yeast, amphibian and human L-rRNAs. A secondary structure model for lemon 26S rRNA has been derived based on the refined model of E. coli 23S rRNA. It has been compared with other eukaryotic L-rRNAs models in terms of location of functionally important regions. Origin and evolution of L-rRNA expansion segments are discussed.

摘要

已经测定了柠檬(Citrus limon)26S rDNA的完整核苷酸序列。该序列已与大肠杆菌(Escherichia coli)、酿酒酵母(Saccharomyces cerevisiae)和水稻(Oryza sativa)的大核糖体RNA(L-rRNA)序列进行了比对。已鉴定出双子叶植物26S rRNA相对于大肠杆菌23S rRNA的九个广泛扩展区段,并与单子叶植物、酵母、两栖动物和人类L-rRNA的类似区段进行了比较。基于大肠杆菌23S rRNA的精细模型推导了柠檬26S rRNA的二级结构模型。已在功能重要区域的位置方面将其与其他真核L-rRNA模型进行了比较。讨论了L-rRNA扩展区段的起源和进化。

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本文引用的文献

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Multiple spacer sequences in the nuclear large subunit ribosomal RNA gene of Crithidia fasciculata.法菲毛滴虫核大亚基核糖体 RNA 基因中的多个间隔序列。
EMBO J. 1987 Apr;6(4):1063-71. doi: 10.1002/j.1460-2075.1987.tb04859.x.
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The primary and secondary structure of yeast 26S rRNA.酵母26S核糖体RNA的一级和二级结构。
Nucleic Acids Res. 1981 Dec 21;9(24):6935-52. doi: 10.1093/nar/9.24.6935.
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Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.
构建模型:利用低覆盖度基因组测序技术开发普通马利筋(Asclepias syriaca)基因组资源。
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来自大肠杆菌、玉米叶绿体以及人类和小鼠线粒体核糖体的大亚基核糖体RNA的二级结构。
Nucleic Acids Res. 1981 Jul 24;9(14):3287-306. doi: 10.1093/nar/9.14.3287.
4
The secondary structure of the protein L1 binding region of ribosomal 23S RNA. Homologies with putative secondary structures of the L11 mRNA and of a region of mitochondrial 16S rRNA.核糖体23S RNA的蛋白质L1结合区域的二级结构。与L11 mRNA的假定二级结构以及线粒体16S rRNA一个区域的同源性。
Nucleic Acids Res. 1981 Jan 24;9(2):293-307. doi: 10.1093/nar/9.2.293.
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The nucleotide sequences of the initiator transfer RNAs from bean cytoplasm and chloroplasts.来自菜豆细胞质和叶绿体的起始转运核糖核酸的核苷酸序列。
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Secondary structure of mouse 28S rRNA and general model for the folding of the large rRNA in eukaryotes.小鼠28S rRNA的二级结构及真核生物中大rRNA折叠的一般模型。
Nucleic Acids Res. 1984 May 25;12(10):4259-79. doi: 10.1093/nar/12.10.4259.
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The binding site for ribosomal protein complex L8 within 23 s ribosomal RNA of Escherichia coli.核糖体蛋白复合物L8在大肠杆菌23 s核糖体RNA中的结合位点。
J Biol Chem. 1984 May 25;259(10):6559-63.
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Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis.来自非洲爪蟾(Xenopus laevis)的28S核糖体DNA序列分析。
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