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炭疽杆菌两种 Dps 小铁蛋白的 CD 和 MCD 光谱研究:O2 和 H2O2 底物在二铁催化中心反应性中的作用。

CD and MCD spectroscopic studies of the two Dps miniferritin proteins from Bacillus anthracis: role of O2 and H2O2 substrates in reactivity of the diiron catalytic centers.

机构信息

Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California 94305, United States.

出版信息

Biochemistry. 2010 Dec 14;49(49):10516-25. doi: 10.1021/bi101346c. Epub 2010 Nov 12.

DOI:10.1021/bi101346c
PMID:21028901
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3075618/
Abstract

DNA protection during starvation (Dps) proteins are miniferritins found in bacteria and archaea that provide protection from uncontrolled Fe(II)/O radical chemistry; thus the catalytic sites are targets for antibiotics against pathogens, such as anthrax. Ferritin protein cages synthesize ferric oxymineral from Fe(II) and O(2)/H(2)O(2), which accumulates in the large central cavity; for Dps, H(2)O(2) is the more common Fe(II) oxidant contrasting with eukaryotic maxiferritins that often prefer dioxygen. To better understand the differences in the catalytic sites of maxi- versus miniferritins, we used a combination of NIR circular dichroism (CD), magnetic circular dichroism (MCD), and variable-temperature, variable-field MCD (VTVH MCD) to study Fe(II) binding to the catalytic sites of the two Bacillus anthracis miniferritins: one in which two Fe(II) react with O(2) exclusively (Dps1) and a second in which both O(2) or H(2)O(2) can react with two Fe(II) (Dps2). Both result in the formation of iron oxybiomineral. The data show a single 5- or 6-coordinate Fe(II) in the absence of oxidant; Fe(II) binding to Dps2 is 30× more stable than Dps1; and the lower limit of K(D) for binding a second Fe(II), in the absence of oxidant, is 2-3 orders of magnitude weaker than for the binding of the single Fe(II). The data fit an equilibrium model where binding of oxidant facilitates formation of the catalytic site, in sharp contrast to eukaryotic M-ferritins where the binuclear Fe(II) centers are preformed before binding of O(2). The two different binding sequences illustrate the mechanistic range possible for catalytic sites of the family of ferritins.

摘要

在饥饿期间保护 DNA(Dps)蛋白是在细菌和古菌中发现的小型 Ferritin,可提供对不受控制的 Fe(II)/O 自由基化学的保护;因此,催化位点是针对炭疽等病原体的抗生素的靶标。Ferritin 蛋白笼从 Fe(II)和 O(2)/H(2)O(2)合成铁氧矿物,其在大的中心腔中积累;对于 Dps,H(2)O(2)是更常见的 Fe(II)氧化剂,与真核生物 maxiFerritin 形成对比,后者通常更喜欢氧气。为了更好地理解 maxiFerritin 和 miniferritin 催化位点的差异,我们使用近红外圆二色性 (CD)、磁圆二色性 (MCD) 和变温变场 MCD (VTVH MCD) 的组合来研究两种炭疽芽孢杆菌 miniferritin 的催化位点中的 Fe(II)结合:一种是两个 Fe(II)仅与 O(2)反应(Dps1),另一种是两个 O(2)或 H(2)O(2)都可以与两个 Fe(II)反应(Dps2)。两者都会形成铁氧生物矿物。数据显示在没有氧化剂的情况下存在单个 5 或 6 配位的 Fe(II);Fe(II)与 Dps2 的结合比 Dps1 稳定 30 倍;在没有氧化剂的情况下,结合第二个 Fe(II)的 K(D)下限比单个 Fe(II)的结合弱 2-3 个数量级。数据符合平衡模型,其中氧化剂的结合促进催化位点的形成,与真核 M-ferritin 形成鲜明对比,后者的双核 Fe(II)中心在结合 O(2)之前就已经形成。这两种不同的结合序列说明了 Ferritin 家族催化位点的可能机制范围。

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本文引用的文献

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Biochim Biophys Acta. 2010 Aug;1800(8):798-805. doi: 10.1016/j.bbagen.2010.01.013. Epub 2010 Feb 4.
2
NMR reveals pathway for ferric mineral precursors to the central cavity of ferritin.核磁共振揭示了铁矿物前体进入铁蛋白中心腔的途径。
Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):545-50. doi: 10.1073/pnas.0908082106. Epub 2009 Dec 16.
3
Iron translocation into and out of Listeria innocua Dps and size distribution of the protein-enclosed nanomineral are modulated by the electrostatic gradient at the 3-fold "ferritin-like" pores.铁进出无害李斯特菌Dps的转运以及蛋白质包裹的纳米矿物质的大小分布受三重“铁蛋白样”孔处的静电梯度调节。
J Biol Chem. 2009 Jul 10;284(28):19101-9. doi: 10.1074/jbc.M109.014670. Epub 2009 May 20.
4
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5
Geometric and electronic structure studies of the binuclear nonheme ferrous active site of toluene-4-monooxygenase: parallels with methane monooxygenase and insight into the role of the effector proteins in O2 activation.甲苯-4-单加氧酶双核非血红素亚铁活性位点的几何与电子结构研究:与甲烷单加氧酶的相似性及对效应蛋白在氧气活化中作用的深入理解
J Am Chem Soc. 2008 Jun 4;130(22):7098-109. doi: 10.1021/ja800654d. Epub 2008 May 14.
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7
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Spectroscopic and computational studies of the de novo designed protein DF2t: correlation to the biferrous active site of ribonucleotide reductase and factors that affect O2 reactivity.从头设计蛋白质DF2t的光谱学和计算研究:与核糖核苷酸还原酶的双铁活性位点及影响O2反应性的因素的相关性
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