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原子水平的证据表明力如何动态调节巯基/二硫键交换。

Atomistic evidence of how force dynamically regulates thiol/disulfide exchange.

机构信息

CAS-MPG Partner Institute and Key Laboratory for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, China.

出版信息

J Am Chem Soc. 2010 Dec 1;132(47):16790-5. doi: 10.1021/ja104763q. Epub 2010 Nov 9.

Abstract

The intricate coupling of mechanical force and chemical reactivity has been increasingly revealed in recent years by force spectroscopy experiments on the thiol/disulfide exchange reaction. We here aimed at elucidating the underlying dynamic effects of force on the reaction center for the case of disulfide bond reduction by dithiothreitol at forces of 200-2000 pN, by combining transition path sampling and quantum/classical mechanical simulations. Reaction rates and their dependence on force as quantified by Δx(r), the distance between reactant and transition state, are in good agreement with experiments but indicate a shift of the transition state structure at high forces. Indeed, while an associate S(N)2 mechanism prevails, force causes a move of the transition state to a longer length of the cleaving bond and a shorter length of the forming disulfide bond. Our results highlight the distribution of force into various degrees of freedom, which implies that care must be taken when correlating Δx(r) with a single order parameter of the reaction.

摘要

近年来,通过对巯基/二硫键交换反应的力谱实验,人们越来越多地揭示了机械力与化学反应性之间的复杂耦合关系。我们旨在通过结合过渡路径采样和量子/经典力学模拟,阐明二硫键还原反应中心在 200-2000 pN 力下的力的潜在动力学效应,该反应由二硫苏糖醇引发。通过定量测量反应速率及其对力的依赖性(通过 Δx(r),即反应物和过渡态之间的距离),我们的结果与实验结果非常吻合,但表明在高力下过渡态结构发生了转移。实际上,尽管存在 S(N)2 缔合机制,但力会导致过渡态向更长的键长和更短的形成二硫键方向移动。我们的结果强调了力在各种自由度中的分布,这意味着在将 Δx(r)与反应的单个序参数相关联时必须小心。

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