Servizo de Microbioloxía-INIBIC, Complexo Hospitalario Universitario A Coruña, 15006,A Coruña, Spain.
BMC Microbiol. 2010 Nov 9;10:279. doi: 10.1186/1471-2180-10-279.
Acinetobacter baumannii is a multidrug-resistant bacterium responsible for nosocomial infections in hospitals worldwide. Study of mutant phenotypes is fundamental for understanding gene function. The methodologies developed to inactivate A. baumannii genes are complicated and time-consuming; sometimes result in unstable mutants, and do not enable construction of double (or more) gene knockout mutant strains of A. baumannii.
We describe here a rapid and simple method of obtaining A. baumannii mutants by gene replacement via double crossover recombination, by use of a PCR product that carries an antibiotic resistance cassette flanked by regions homologous to the target locus. To demonstrate the reproducibility of the approach, we produced mutants of three different chromosomal genes (omp33, oxyR, and soxR) by this method. In addition, we disrupted one of these genes (omp33) by integration of a plasmid into the chromosome by single crossover recombination, the most widely used method of obtaining A. baumannii mutants. Comparison of the different techniques revealed absolute stability when the gene was replaced by a double recombination event, whereas up to 40% of the population reverted to wild-type when the plasmid was disrupting the target gene after 10 passages in broth without selective pressure. Moreover, we demonstrate that the combination of both gene disruption and gene replacement techniques is an easy and useful procedure for obtaining double gene knockout mutants in A. baumannii.
This study provides a rapid and simple method of obtaining stable mutants of A. baumannii free of foreign plasmidic DNA, which does not require cloning steps, and enables construction of multiple gene knockout mutants.
鲍曼不动杆菌是一种多药耐药菌,可导致全球医院内的医院获得性感染。对突变表型的研究对于了解基因功能至关重要。用于失活鲍曼不动杆菌基因的方法复杂且耗时;有时会导致不稳定的突变体,并且不能构建鲍曼不动杆菌的双(或更多)基因敲除突变株。
我们在这里描述了一种通过双交换重组通过基因替换快速简便地获得鲍曼不动杆菌突变体的方法,该方法使用带有抗生素抗性盒的 PCR 产物,该抗性盒两侧为靶基因座同源的区域。为了证明该方法的可重复性,我们通过该方法产生了三个不同染色体基因(omp33、oxyR 和 soxR)的突变体。此外,我们通过单交换重组将质粒整合到染色体中破坏了其中一个基因(omp33),这是获得鲍曼不动杆菌突变体最常用的方法。比较不同的技术揭示了当通过双交换事件替换基因时绝对稳定,而在没有选择压力的情况下在肉汤中传代 10 次后,当质粒破坏靶基因时,高达 40%的群体回复为野生型。此外,我们证明了基因敲除和基因替换技术的组合是在鲍曼不动杆菌中获得双基因敲除突变体的一种简单而有用的方法。
本研究提供了一种快速简便的方法,可以获得无外源质粒 DNA 的稳定鲍曼不动杆菌突变体,该方法不需要克隆步骤,并能够构建多个基因敲除突变体。