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细胞色素c周围的电势场以及离子强度对马细胞色素c反应速率的影响。

The electric potential field around cytochrome c and the effect of ionic strength on reaction rates of horse cytochrome c.

作者信息

Koppenol W H, Vroonland C A, Braams R

出版信息

Biochim Biophys Acta. 1978 Sep 7;503(3):499-508. doi: 10.1016/0005-2728(78)90149-4.

DOI:10.1016/0005-2728(78)90149-4
PMID:210807
Abstract
  1. The electric potential fields around tuna ferri- and ferrocytochrome c were calculated assuming that (i) all of the lysines and arginines are protonated, (ii) all of the glutamic and aspartic acids and the terminal carboxylic acid are dissociated, and (iii) the haem has a net charge of +1e in the oxidized form. 2. Near the haem crevice high values for the potential (greater than +2.5 kT/e) are found. Consequently, electron transfer via the haem edge is favored if the oxidant or reductant is negatively charged. 3. The inhomogeneous distribution of charges leads to a dipole moment of 244 and 238 debye for oxidized and reduced tuna cytochrome c, respectively. Horse cytochrome c has dipole moments of 303 (oxidized) and 286 (reduced) debye. 4. A line through the positive and negative charge centres, the dipole axis, crosses the tuna cytochrome c surface at Ala 83 (positive part) and Lys 99 (negative part). The direction of the dipole axis of horse cytochrome c is very similar. Since the centre of the domain on the cytochrome c surface, which is involved in the binding to cytochrome c oxidase, is found at the beta-carbon of the Phe 82 in horse cytochrome c (Ferguson-Miller, S., Brautigan, D.L. and Margoliash, E. (1978) J. Biol. Chem. 253, 149--159) it is suggested that the direction of the dipole is of physiological importance. 5. The activity coefficients of horse ferri- and ferrocytochrome c were calculated as a function of ionic strength using a formula derived by Kirkwood (Kirkwood, J.G. (1934) J. Chem. Phys. 2, 351--361). 6. Due to the high net charge at pH 7.5 the influence of the dipole moments of horse ferri- and ferrocytochrome c on the respective activity coefficients can be neglected at I less than or equal to 50 mM. 7. Using the Brønsted relation the effect of ionic strength on reaction rates of horse cytochrome c was calculated. Good agreement is found between theory and experimental results reported in the literature.
摘要
  1. 计算了金枪鱼铁细胞色素c和亚铁细胞色素c周围的电势场,假设:(i)所有赖氨酸和精氨酸都被质子化;(ii)所有谷氨酸、天冬氨酸和末端羧酸都解离;(iii)血红素在氧化形式下净电荷为 +1e。2. 在血红素裂隙附近发现电势值较高(大于 +2.5 kT/e)。因此,如果氧化剂或还原剂带负电荷,则有利于通过血红素边缘进行电子转移。3. 电荷的不均匀分布导致氧化型和还原型金枪鱼细胞色素c的偶极矩分别为244和238德拜。马细胞色素c的偶极矩为氧化型303德拜、还原型286德拜。4. 一条穿过正电荷和负电荷中心的线,即偶极轴,在金枪鱼细胞色素c表面的Ala 83(正部分)和Lys 99(负部分)处穿过。马细胞色素c偶极轴的方向非常相似。由于在马细胞色素c中,细胞色素c表面参与与细胞色素c氧化酶结合的结构域中心位于Phe 82的β - 碳处(弗格森 - 米勒,S.,布劳蒂根,D.L.和马戈利亚什,E.(1978年)《生物化学杂志》253,149 - 159),因此表明偶极方向具有生理重要性。5. 使用柯克伍德推导的公式(柯克伍德,J.G.(1934年)《化学物理杂志》2,351 - 361)计算了马铁细胞色素c和马亚铁细胞色素c的活度系数与离子强度的函数关系。6. 由于在pH 7.5时净电荷较高,在离子强度I≤50 mM时,马铁细胞色素c和马亚铁细胞色素c的偶极矩对各自活度系数的影响可以忽略不计。7. 使用布朗斯特关系计算了离子强度对马细胞色素c反应速率的影响。理论与文献报道的实验结果之间发现了良好的一致性。

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