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生物钟对日光波动的稳健性:来自微型真核生物盘藻的线索。

Robustness of circadian clocks to daylight fluctuations: hints from the picoeucaryote Ostreococcus tauri.

机构信息

Laboratoire de Physique des Lasers, Atomes, et Molécules, UFR de Physique, Université Lille 1, Villeneuve d'Ascq, France.

出版信息

PLoS Comput Biol. 2010 Nov 11;6(11):e1000990. doi: 10.1371/journal.pcbi.1000990.

Abstract

The development of systemic approaches in biology has put emphasis on identifying genetic modules whose behavior can be modeled accurately so as to gain insight into their structure and function. However, most gene circuits in a cell are under control of external signals and thus, quantitative agreement between experimental data and a mathematical model is difficult. Circadian biology has been one notable exception: quantitative models of the internal clock that orchestrates biological processes over the 24-hour diurnal cycle have been constructed for a few organisms, from cyanobacteria to plants and mammals. In most cases, a complex architecture with interlocked feedback loops has been evidenced. Here we present the first modeling results for the circadian clock of the green unicellular alga Ostreococcus tauri. Two plant-like clock genes have been shown to play a central role in the Ostreococcus clock. We find that their expression time profiles can be accurately reproduced by a minimal model of a two-gene transcriptional feedback loop. Remarkably, best adjustment of data recorded under light/dark alternation is obtained when assuming that the oscillator is not coupled to the diurnal cycle. This suggests that coupling to light is confined to specific time intervals and has no dynamical effect when the oscillator is entrained by the diurnal cycle. This intriguing property may reflect a strategy to minimize the impact of fluctuations in daylight intensity on the core circadian oscillator, a type of perturbation that has been rarely considered when assessing the robustness of circadian clocks.

摘要

系统生物学方法的发展强调了识别遗传模块的重要性,这些模块的行为可以被准确建模,以便深入了解它们的结构和功能。然而,细胞中的大多数基因回路都受到外部信号的控制,因此,实验数据与数学模型之间很难达到定量一致。昼夜节律生物学就是一个显著的例外:已经为少数生物体(从蓝藻到植物和哺乳动物)构建了协调生物过程的 24 小时昼夜节律的内部时钟的定量模型。在大多数情况下,都证明了具有互锁反馈回路的复杂架构。在这里,我们首次展示了绿藻甲藻昼夜节律钟的建模结果。已经证明,两种类似植物的时钟基因在甲藻时钟中起着核心作用。我们发现,它们的表达时间谱可以通过一个具有两个基因转录反馈回路的最小模型来准确再现。值得注意的是,当假设振荡器未与昼夜周期耦合时,对在光/暗交替下记录的数据进行最佳调整。这表明,耦合到光仅限于特定的时间间隔,并且当振荡器被昼夜周期驯化时,没有动态效应。这种有趣的特性可能反映了一种策略,以最小化白天强度波动对核心昼夜振荡器的影响,这是一种在评估昼夜节律钟的稳健性时很少考虑的扰动。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87f6/2978692/d9435bbab2b5/pcbi.1000990.g001.jpg

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