Department of Computational Intelligence and Systems Science, Interdisciplinary Graduate School of Science and Engineering, Tokyo Institute of Technology, Midori-ku, Yokohama, Kanagawa, Japan.
BMC Genomics. 2010 Dec 2;11 Suppl 4(Suppl 4):S16. doi: 10.1186/1471-2164-11-S4-S16.
Appropriate regulation of respective gene expressions is a bottleneck for the realization of artificial biological systems inside living cells. The modification of several promoter sequences is required to achieve appropriate regulation of the systems. However, a time-consuming process is required for the insertion of an operator, a binding site of a protein for gene expression, to the gene regulatory region of a plasmid. Thus, a standardized method for integrating operator sequences to the regulatory region of a plasmid is required.
We developed a standardized method for integrating operator sequences to the regulatory region of a plasmid and constructed a synthetic promoter that functions as a genetic AND gate. By standardizing the regulatory region of a plasmid and the operator parts, we established a platform for modular assembly of the operator parts. Moreover, by assembling two different operator parts on the regulatory region, we constructed a regulatory device with an AND gate function.
We implemented a new standard to assemble operator parts for construction of functional genetic logic gates. The logic gates at the molecular scale have important implications for reprogramming cellular behavior.
在活细胞内实现人工生物系统,需要对相应基因的表达进行适当的调控。为了实现系统的适当调控,需要对多个启动子序列进行修饰。然而,将一个操纵子(蛋白质与基因表达的结合位点)插入质粒的基因调控区是一个耗时的过程。因此,需要一种将操纵序列整合到质粒调控区的标准化方法。
我们开发了一种将操纵序列整合到质粒调控区的标准化方法,并构建了一个作为遗传“与”门的合成启动子。通过标准化质粒的调控区和操纵子部分,我们建立了一个模块化组装操纵子部分的平台。此外,通过在调控区上组装两个不同的操纵子部分,我们构建了一个具有“与”门功能的调控装置。
我们实施了一种新的标准,用于组装功能遗传逻辑门的操纵子部分。分子尺度上的逻辑门对重新编程细胞行为具有重要意义。