Functional Proteomics Laboratory, Centro de Investigaciones Biológicas (CIB-CSIC), 28040 Madrid, Spain.
Mol Cell Proteomics. 2011 Mar;10(3):M110.001784. doi: 10.1074/mcp.M110.001784. Epub 2011 Jan 12.
The characterization of the humoral response in cancer patients is becoming a practical alternative to improve early detection. We prepared phage microarrays containing colorectal cancer cDNA libraries to identify phage-expressed peptides recognized by tumor-specific autoantibodies from patient sera. From a total of 1536 printed phages, 128 gave statistically significant values to discriminate cancer patients from control samples. From this, 43 peptide sequences were unique following DNA sequencing. Six phages containing homologous sequences to STK4/MST1, SULF1, NHSL1, SREBF2, GRN, and GTF2I were selected to build up a predictor panel. A previous study with high-density protein microarrays had identified STK4/MST1 as a candidate biomarker. An independent collection of 153 serum samples (50 colorectal cancer sera and 103 reference samples, including healthy donors and sera from other related pathologies) was used as a validation set to study prediction capability. A combination of four phages and two recombinant proteins, corresponding to MST1 and SULF1, achieved an area under the curve of 0.86 to correctly discriminate cancer from healthy sera. Inclusion of sera from other different neoplasias did not change significantly this value. For early stages (A+B), the corrected area under the curve was 0.786. Moreover, we have demonstrated that MST1 and SULF1 proteins, homologous to phage-peptide sequences, can replace the original phages in the predictor panel, improving their diagnostic accuracy.
对癌症患者体液反应的特征分析正在成为一种提高早期检测的实用方法。我们制备了包含结直肠癌 cDNA 文库的噬菌体微阵列,以鉴定来自患者血清的肿瘤特异性自身抗体识别的噬菌体表达肽。在总共 1536 个打印的噬菌体中,有 128 个显示出统计学上可区分癌症患者和对照样本的值。从这 128 个中,有 43 个肽序列在 DNA 测序后是独特的。选择含有 STK4/MST1、SULF1、NHSL1、SREBF2、GRN 和 GTF2I 同源序列的六个噬菌体来构建预测面板。之前使用高密度蛋白质微阵列的研究已经将 STK4/MST1 鉴定为候选生物标志物。使用独立的 153 份血清样本集(50 份结直肠癌血清和 103 份参考样本,包括健康供体和来自其他相关病理的血清)作为验证集来研究预测能力。四个噬菌体和两个重组蛋白(对应于 MST1 和 SULF1)的组合能够区分癌症和健康血清,曲线下面积为 0.86。此外,我们已经证明,与噬菌体肽序列同源的 MST1 和 SULF1 蛋白可以替代预测面板中的原始噬菌体,从而提高其诊断准确性。对于早期阶段(A+B),校正后的曲线下面积为 0.786。