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1
Comparison of Current BLAST Software on Nucleotide Sequences.
Proc IPDPS (Conf). 2005 Apr 4;19:8. doi: 10.1109/IPDPS.2005.145.
3
Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters.
BMC Bioinformatics. 2022 Dec 16;23(1):544. doi: 10.1186/s12859-022-05029-7.
4
muBLASTP: database-indexed protein sequence search on multicore CPUs.
BMC Bioinformatics. 2016 Nov 4;17(1):443. doi: 10.1186/s12859-016-1302-4.
5
BLAST+: architecture and applications.
BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.
6
G-BLASTN: accelerating nucleotide alignment by graphics processors.
Bioinformatics. 2014 May 15;30(10):1384-91. doi: 10.1093/bioinformatics/btu047. Epub 2014 Jan 24.
7
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences.
FEMS Microbiol Lett. 1999 May 15;174(2):247-50. doi: 10.1111/j.1574-6968.1999.tb13575.x.
8
iBLAST: Incremental BLAST of new sequences via automated e-value correction.
PLoS One. 2021 Apr 22;16(4):e0249410. doi: 10.1371/journal.pone.0249410. eCollection 2021.
10
BLAST: improvements for better sequence analysis.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W6-9. doi: 10.1093/nar/gkl164.

引用本文的文献

1
Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters.
BMC Bioinformatics. 2022 Dec 16;23(1):544. doi: 10.1186/s12859-022-05029-7.
3
The Complete Mitogenome of and Insights Into Its Evolutionary Pattern Based on Simple Repeat Sequences of Seed Plant Mitogenomes.
Front Plant Sci. 2022 Jan 26;12:802321. doi: 10.3389/fpls.2021.802321. eCollection 2021.
5
Novel domain combinations in proteins encoded by chimeric transcripts.
Bioinformatics. 2012 Jun 15;28(12):i67-74. doi: 10.1093/bioinformatics/bts216.
6
Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.
Genome Res. 2012 Jul;22(7):1231-42. doi: 10.1101/gr.130062.111. Epub 2012 May 15.
7
Genome-wide analysis of the heat shock transcription factors in Populus trichocarpa and Medicago truncatula.
Mol Biol Rep. 2012 Feb;39(2):1877-86. doi: 10.1007/s11033-011-0933-9. Epub 2011 May 29.

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BLAST: at the core of a powerful and diverse set of sequence analysis tools.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W20-5. doi: 10.1093/nar/gkh435.
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The genome sequence and structure of rice chromosome 1.
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Fast algorithms for large-scale genome alignment and comparison.
Nucleic Acids Res. 2002 Jun 1;30(11):2478-83. doi: 10.1093/nar/30.11.2478.
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BLAT--the BLAST-like alignment tool.
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Protein sequence similarity searches using patterns as seeds.
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
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dbEST--database for "expressed sequence tags".
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The turning point in genome research.
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A general method applicable to the search for similarities in the amino acid sequence of two proteins.
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Fluorescence detection in automated DNA sequence analysis.
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