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研究原倍体酵母 L. waltii 的遗传、基因组和分子工具。

Genetic, genomic, and molecular tools for studying the protoploid yeast, L. waltii.

机构信息

Department of Genome Sciences, University of Washington, Box 355065, Seattle, WA 98195, USA.

出版信息

Yeast. 2011 Feb;28(2):137-51. doi: 10.1002/yea.1826. Epub 2010 Nov 2.

Abstract

Sequencing of the yeast Kluyveromyces waltii (recently renamed Lachancea waltii) provided evidence of a whole genome duplication event in the lineage leading to the well-studied Saccharomyces cerevisiae. While comparative genomic analyses of these yeasts have proven to be extremely instructive in modeling the loss or maintenance of gene duplicates, experimental tests of the ramifications following such genome alterations remain difficult. To transform L. waltii from an organism of the computational comparative genomic literature into an organism of the functional comparative genomic literature, we have developed genetic, molecular and genomic tools for working with L. waltii. In particular, we have characterized basic properties of L. waltii (growth, ploidy, molecular karyotype, mating type and the sexual cycle), developed transformation, cell cycle arrest and synchronization protocols, and have created centromeric and non-centromeric vectors as well as a genome browser for L. waltii. We hope that these tools will be used by the community to follow up on the ideas generated by sequence data and lead to a greater understanding of eukaryotic biology and genome evolution.

摘要

对酵母 Kluyveromyces waltii(最近更名为 Lachancea waltii)的测序为研究得很好的酿酒酵母的进化支系中发生的全基因组复制事件提供了证据。虽然这些酵母的比较基因组分析已被证明在模拟基因重复的丢失或保留方面非常有启发性,但对这种基因组改变后产生的影响进行实验测试仍然很困难。为了将 L. waltii 从计算比较基因组学文献中的生物体转化为功能比较基因组学文献中的生物体,我们已经开发了用于研究 L. waltii 的遗传、分子和基因组工具。特别是,我们已经描述了 L. waltii 的基本特性(生长、倍性、分子核型、交配型和有性循环),开发了转化、细胞周期停滞和同步化方案,并创建了着丝粒和非着丝粒载体以及 L. waltii 的基因组浏览器。我们希望这些工具将被社区用于跟进序列数据产生的想法,并导致对真核生物生物学和基因组进化的更深入理解。

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