MolLife Design, LLC, St. Louis, Missouri 63141, USA.
Proteins. 2011 Mar;79(3):787-802. doi: 10.1002/prot.22918. Epub 2010 Nov 30.
Molecular modeling of conformational changes occurring in the transmembrane region of the complement factor 5a receptor (C5aR) during receptor activation was performed by comparing two constitutively active mutants (CAMs) of C5aR, NQ (I124N/L127Q), and F251A, to those of the wild-type C5aR and NQ-N296A (I124N/L127Q/N296A), which have the wild-type phenotype. Modeling involved comprehensive sampling of various rotations of TM helices aligned to the crystal template of the dark-adapted rhodopsin along their long axes. By assuming that the relative energies of the spontaneously activated states of CAMs should be lower or at least comparable to energies characteristic for the ground states, we selected the plausible models for the conformational states associated with constitutive activation in C5aR. The modeling revealed that the hydrogen bonds between the side chains of D82-N119, S85-N119, and S131-C221 characteristic for the ground state were replaced by the hydrogen bonds D82-N296, N296-Y300, and S131-R134, respectively, in the activated states. Also, conformational transitions that occurred upon activation were hindered by contacts between the side chains of L127 and F251. The results rationalize the available data of mutagenesis in C5aR and offer the first specific molecular mechanism for the loss of constitutive activity in NQ-N296A. Our results also contributed to understanding the general structural mechanisms of activation in G-protein-coupled receptors lacking the "ionic lock", R(3.50) and E/D(6.30). Importantly, these results were obtained by modeling approaches that deliberately simplify many elements in order to explore potential conformations of GPCRs involving large-scale molecular movements.
对补体因子 5a 受体 (C5aR) 跨膜区域在受体激活过程中发生的构象变化进行了分子建模,方法是将两种组成型激活突变体 (CAMs) 的 C5aR 与野生型 C5aR 和 NQ-N296A (I124N/L127Q/N296A) 进行比较,NQ-N296A (I124N/L127Q/N296A) 具有野生型表型。建模涉及到沿着长轴对与暗适应视紫红质晶体模板对齐的 TM 螺旋进行各种旋转的全面采样。通过假设 CAMs 的自发激活状态的相对能量应该更低或至少与特征为基态的能量相当,我们选择了与 C5aR 组成型激活相关的构象状态的合理模型。建模表明,与基态特征的 D82-N119、S85-N119 和 S131-C221 侧链之间的氢键分别被激活状态下的 D82-N296、N296-Y300 和 S131-R134 氢键取代。此外,激活后发生的构象转变受到 L127 和 F251 侧链之间的接触的阻碍。这些结果合理地解释了 C5aR 中诱变的现有数据,并为 NQ-N296A 中组成型活性丧失提供了第一个具体的分子机制。我们的结果也有助于理解缺乏“离子锁”的 G 蛋白偶联受体的一般激活结构机制,R(3.50)和 E/D(6.30)。重要的是,这些结果是通过建模方法获得的,该方法故意简化许多元素,以探索涉及大规模分子运动的 GPCR 的潜在构象。