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绿色糖单孢菌模式菌株(P101)的全基因组序列

Complete genome sequence of Saccharomonospora viridis type strain (P101).

作者信息

Pati Amrita, Sikorski Johannes, Nolan Matt, Lapidus Alla, Copeland Alex, Glavina Del Rio Tijana, Lucas Susan, Chen Feng, Tice Hope, Pitluck Sam, Cheng Jan-Fang, Chertkov Olga, Brettin Thomas, Han Cliff, Detter John C, Kuske Cheryl, Bruce David, Goodwin Lynne, Chain Patrick, D'haeseleer Patrik, Chen Amy, Palaniappan Krishna, Ivanova Natalia, Mavromatis Konstantinos, Mikhailova Natalia, Rohde Manfred, Tindall Brian J, Göker Markus, Bristow Jim, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter

出版信息

Stand Genomic Sci. 2009 Sep 24;1(2):141-9. doi: 10.4056/sigs.20263.

Abstract

Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer's lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

绿色糖单孢菌(舒尔曼斯等人,1956年),诺诺穆里亚和小原,1971年,是糖单孢菌属的模式种,该属属于假诺卡氏菌科。绿色糖单孢菌之所以受到关注,是因为它是一种革兰氏阴性菌,却被归类于通常为革兰氏阳性的放线菌中。该物种的成员经常在高温堆肥和干草中被发现,其孢子可导致农民肺、蔗渣肺和加湿器热。已发现绿色糖单孢菌的菌株能够代谢外源性五氯苯酚(PCP)。本研究中描述的菌株是从爱尔兰的泥炭沼泽中分离出来的。在此,我们描述了该生物体的特征,以及完整的基因组序列和注释。这是假诺卡氏菌科的首个完整基因组序列,这个长度为4,308,349 bp的单复制子基因组及其3906个蛋白质编码基因和64个RNA基因是细菌和古菌基因组百科全书项目的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b00/3035233/f4dd45e0ff87/sigs.20263-f1.jpg

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