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短小阿托波菌模式菌株(IPP 1246)的全基因组序列

Complete genome sequence of Atopobium parvulum type strain (IPP 1246).

作者信息

Copeland Alex, Sikorski Johannes, Lapidus Alla, Nolan Matt, Del Rio Tijana Glavina, Lucas Susan, Chen Feng, Tice Hope, Pitluck Sam, Cheng Jan-Fang, Pukall Rüdiger, Chertkov Olga, Brettin Thomas, Han Cliff, Detter John C, Kuske Cheryl, Bruce David, Goodwin Lynne, Ivanova Natalia, Mavromatis Konstantinos, Mikhailova Natalia, Chen Amy, Palaniappan Krishna, Chain Patrick, Rohde Manfred, Göker Markus, Bristow Jim, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter, Detter John C

出版信息

Stand Genomic Sci. 2009 Sep 23;1(2):166-73. doi: 10.4056/sigs.29547.

DOI:10.4056/sigs.29547
PMID:21304653
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3035223/
Abstract

Atopobium parvulum (Weinberg et al. 1937) Collins and Wallbanks 1993 comb. nov. is the type strain of the species and belongs to the genomically yet unstudied Atopobium/Olsenella branch of the family Coriobacteriaceae. The species A. parvulum is of interest because its members are frequently isolated from the human oral cavity and are found to be associated with halitosis (oral malodor) but not with periodontitis. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Atopobium, and the 1,543,805 bp long single replicon genome with its 1369 protein-coding and 49 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

微小阿托波菌(Weinberg等人,1937年)Collins和Wallbanks于1993年重新组合命名(新组合),是该物种的模式菌株,属于科里杆菌科基因组尚未研究的阿托波菌/奥尔森菌分支。微小阿托波菌这一物种备受关注,因为其成员经常从人类口腔中分离出来,并且被发现与口臭(口腔异味)有关,但与牙周炎无关。在此,我们描述了该微生物的特征,以及完整的基因组序列和注释。这是阿托波菌属的首个完整基因组序列,这个长度为1,543,805 bp的单复制子基因组及其1369个蛋白质编码基因和49个RNA基因是细菌和古菌基因组百科全书项目的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9209/3035223/15f2ab7b4f87/sigs.29547-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9209/3035223/7cfd27dc430a/sigs.29547-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9209/3035223/c87d94764b90/sigs.29547-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9209/3035223/15f2ab7b4f87/sigs.29547-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9209/3035223/7cfd27dc430a/sigs.29547-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9209/3035223/c87d94764b90/sigs.29547-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9209/3035223/15f2ab7b4f87/sigs.29547-f3.jpg

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