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赭黄嗜盐放线菌模式菌株(SMP-2)的全基因组序列

Complete genome sequence of Haliangium ochraceum type strain (SMP-2).

作者信息

Ivanova Natalia, Daum Chris, Lang Elke, Abt Birte, Kopitz Markus, Saunders Elizabeth, Lapidus Alla, Lucas Susan, Glavina Del Rio Tijana, Nolan Matt, Tice Hope, Copeland Alex, Cheng Jan-Fang, Chen Feng, Bruce David, Goodwin Lynne, Pitluck Sam, Mavromatis Konstantinos, Pati Amrita, Mikhailova Natalia, Chen Amy, Palaniappan Krishna, Land Miriam, Hauser Loren, Chang Yun-Juan, Jeffries Cynthia D, Detter John C, Brettin Thomas, Rohde Manfred, Göker Markus, Bristow Jim, Markowitz Victor, Eisen Jonathan A, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter

出版信息

Stand Genomic Sci. 2010 Jan 28;2(1):96-106. doi: 10.4056/sigs.69.1277.

Abstract

Haliangium ochraceum Fudou et al. 2002 is the type species of the genus Haliangium in the myxococcal family 'Haliangiaceae'. Members of the genus Haliangium are the first halophilic myxobacterial taxa described. The cells of the species follow a multicellular lifestyle in highly organized biofilms, called swarms, they decompose bacterial and yeast cells as most myxobacteria do. The fruiting bodies contain particularly small coccoid myxospores. H. ochraceum encodes the first actin homologue identified in a bacterial genome. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the myxococcal suborder Nannocystineae, and the 9,446,314 bp long single replicon genome with its 6,898 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

赭黄嗜盐黏球菌(Haliangium ochraceum)Fudou等人于2002年发现,是黏球菌科“嗜盐黏球菌科(Haliangiaceae)”中嗜盐黏球菌属的模式种。嗜盐黏球菌属成员是最早被描述的嗜盐黏细菌类群。该物种的细胞在高度组织化的生物膜(称为群体)中以多细胞方式生活,它们像大多数黏细菌一样分解细菌和酵母细胞。子实体含有特别小的球状黏孢子。赭黄嗜盐黏球菌编码了在细菌基因组中鉴定出的首个肌动蛋白同源物。在此,我们描述该生物体的特征,以及完整的基因组序列和注释。这是黏球菌亚目侏囊菌亚纲(Nannocystineae)成员的首个完整基因组序列,这个长达9,446,314 bp的单复制子基因组及其6,898个蛋白质编码基因和53个RNA基因是细菌和古菌基因组百科全书项目的一部分。

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