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海洋嗜热沉积杆菌模式菌株(JW/IW-1228P)的全基因组序列

Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P).

作者信息

Pitluck Sam, Yasawong Montri, Munk Christine, Nolan Matt, Lapidus Alla, Lucas Susan, Glavina Del Rio Tijana, Tice Hope, Cheng Jan-Fang, Bruce David, Detter Chris, Tapia Roxanne, Han Cliff, Goodwin Lynne, Liolios Konstantinos, Ivanova Natalia, Mavromatis Konstantinos, Mikhailova Natalia, Pati Amrita, Chen Amy, Palaniappan Krishna, Land Miriam, Hauser Loren, Chang Yun-Juan, Jeffries Cynthia D, Rohde Manfred, Spring Stefan, Sikorski Johannes, Göker Markus, Woyke Tanja, Bristow James, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter

出版信息

Stand Genomic Sci. 2010 Sep 28;3(2):108-16. doi: 10.4056/sigs.1133078.

DOI:10.4056/sigs.1133078
PMID:21304740
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3035372/
Abstract

Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sample of deep sea sediments of the Peruvian high productivity upwelling system. This is the first completed genome sequence of a member of the genus Thermosediminibacter and the seventh genome sequence in the family Thermoanaerobacteraceae. The 2,280,035 bp long genome with its 2,285 protein-coding and 63 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

海洋嗜热减硫杆菌(Lee等人,2006年)是嗜热厌氧杆菌科嗜热减硫杆菌属的模式种。这种厌氧、嗜压、化能有机营养型嗜热菌的特征是革兰氏阴性直杆菌至弯杆菌。本研究中描述的菌株是从秘鲁高生产力上升流系统深海沉积物的岩芯样本中分离出来的。这是嗜热减硫杆菌属成员的首个完整基因组序列,也是嗜热厌氧杆菌科的第七个基因组序列。这个长度为2,280,035 bp的基因组,包含2,285个蛋白质编码基因和63个RNA基因,是细菌和古菌基因组百科全书项目的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1420/3035372/c8f73c739b36/sigs.1133078-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1420/3035372/c4f88417127f/sigs.1133078-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1420/3035372/41b2f2e71235/sigs.1133078-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1420/3035372/c8f73c739b36/sigs.1133078-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1420/3035372/c4f88417127f/sigs.1133078-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1420/3035372/41b2f2e71235/sigs.1133078-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1420/3035372/c8f73c739b36/sigs.1133078-f3.jpg

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