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开发一个基于互联网的系统,使用贝叶斯网络对生物素代谢进行建模。

Development of an internet based system for modeling biotin metabolism using Bayesian networks.

机构信息

Department of Statistics, University of Nebraska-Lincoln, Lincoln, NE 68583, USA.

出版信息

Comput Methods Programs Biomed. 2011 Nov;104(2):254-9. doi: 10.1016/j.cmpb.2011.02.004. Epub 2011 Feb 26.

Abstract

Biotin is an essential water-soluble vitamin crucial for maintaining normal body functions. The importance of biotin for human health has been under-appreciated but there is plenty of opportunity for future research with great importance for human health. Currently, carrying out predictions of biotin metabolism involves tedious manual manipulations. In this paper, we report the development of BiotinNet, an internet based program that uses Bayesian networks to integrate published data on various aspects of biotin metabolism. Users can provide a combination of values on the levels of biotin related metabolites to obtain the predictions on other metabolites that are not specified. As an inherent feature of Bayesian networks, the uncertainty of the prediction is also quantified and reported to the user. This program enables convenient in silico experiments regarding biotin metabolism, which can help researchers design future experiments while new data can be continuously incorporated.

摘要

生物素是一种必需的水溶性维生素,对维持正常的身体功能至关重要。生物素对人类健康的重要性一直被低估,但未来有很多机会进行研究,对人类健康具有重要意义。目前,进行生物素代谢的预测需要繁琐的手动操作。在本文中,我们报告了 BiotinNet 的开发,这是一个基于互联网的程序,使用贝叶斯网络整合了关于生物素代谢各个方面的已发表数据。用户可以提供生物素相关代谢物水平的组合值,以获得未指定的其他代谢物的预测。作为贝叶斯网络的固有特征,预测的不确定性也被量化并报告给用户。该程序实现了生物素代谢的方便的计算机模拟实验,这可以帮助研究人员设计未来的实验,同时可以不断纳入新的数据。

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本文引用的文献

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Biotin and biotinidase deficiency.生物素和生物素酶缺乏症。
Expert Rev Endocrinol Metab. 2008 Nov 1;3(6):715-724. doi: 10.1586/17446651.3.6.715.
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Urinary organic acids in infant malnutrition.婴儿营养不良中的尿有机酸
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