Suppr超能文献

用于大分子晶体学的JBluIce-EPICS控制系统。

JBluIce-EPICS control system for macromolecular crystallography.

作者信息

Stepanov Sergey, Makarov Oleg, Hilgart Mark, Pothineni Sudhir Babu, Urakhchin Alex, Devarapalli Satish, Yoder Derek, Becker Michael, Ogata Craig, Sanishvili Ruslan, Venugopalan Nagarajan, Smith Janet L, Fischetti Robert F

机构信息

GM/CA-CAT at the APS, Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2011 Mar;67(Pt 3):176-88. doi: 10.1107/S0907444910053916. Epub 2011 Feb 15.

Abstract

The trio of macromolecular crystallography beamlines constructed by the General Medicine and Cancer Institutes Collaborative Access Team (GM/CA-CAT) in Sector 23 of the Advanced Photon Source (APS) have been in growing demand owing to their outstanding beam quality and capacity to measure data from crystals of only a few micrometres in size. To take full advantage of the state-of-the-art mechanical and optical design of these beamlines, a significant effort has been devoted to designing fast, convenient, intuitive and robust beamline controls that could easily accommodate new beamline developments. The GM/CA-CAT beamline controls are based on the power of EPICS for distributed hardware control, the rich Java graphical user interface of Eclipse RCP and the task-oriented philosophy as well as the look and feel of the successful SSRL BluIce graphical user interface for crystallography. These beamline controls feature a minimum number of software layers, the wide use of plug-ins that can be written in any language and unified motion controls that allow on-the-fly scanning and optimization of any beamline component. This paper describes the ways in which BluIce was combined with EPICS and converted into the Java-based JBluIce, discusses the solutions aimed at streamlining and speeding up operations and gives an overview of the tools that are provided by this new open-source control system for facilitating crystallographic experiments, especially in the field of microcrystallography.

摘要

由普通医学与癌症研究所协作访问团队(GM/CA-CAT)在先进光子源(APS)23区建造的三条大分子晶体学光束线,因其出色的光束质量以及测量仅几微米大小晶体数据的能力,需求不断增长。为充分利用这些光束线的先进机械和光学设计,已投入大量精力设计快速、便捷、直观且强大的光束线控制系统,使其能够轻松适应新的光束线发展。GM/CA-CAT光束线控制系统基于EPICS的分布式硬件控制能力、Eclipse RCP丰富的Java图形用户界面、面向任务的理念以及成功的SSRL BluIce晶体学图形用户界面的外观和感觉。这些光束线控制系统具有最少的软件层、广泛使用可采用任何语言编写的插件以及统一的运动控制,允许对任何光束线组件进行实时扫描和优化。本文描述了将BluIce与EPICS结合并转换为基于Java的JBluIce的方式,讨论了旨在简化和加速操作的解决方案,并概述了这个新的开源控制系统提供的用于促进晶体学实验,特别是在微晶学领域的工具。

相似文献

1
JBluIce-EPICS control system for macromolecular crystallography.用于大分子晶体学的JBluIce-EPICS控制系统。
Acta Crystallogr D Biol Crystallogr. 2011 Mar;67(Pt 3):176-88. doi: 10.1107/S0907444910053916. Epub 2011 Feb 15.
5
Integrated software for a macromolecular crystallography synchrotron beamline.用于大分子晶体学同步加速器光束线的集成软件。
Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):718-25. doi: 10.1107/s0907444997012481.

引用本文的文献

2
SDU - software for high-throughput automated data collection at the Swiss Light Source.瑞士光源高通量自动化数据采集软件(SDU)。
J Synchrotron Radiat. 2023 May 1;30(Pt 3):538-545. doi: 10.1107/S1600577523002631. Epub 2023 Apr 12.
7
Crystal structure of the Escherichia coli transcription termination factor Rho.大肠杆菌转录终止因子 Rho 的晶体结构。
Acta Crystallogr F Struct Biol Commun. 2020 Sep 1;76(Pt 9):398-405. doi: 10.1107/S2053230X20010572. Epub 2020 Aug 20.
8
A structural framework for unidirectional transport by a bacterial ABC exporter.一种细菌 ABC 外排泵单向运输的结构框架。
Proc Natl Acad Sci U S A. 2020 Aug 11;117(32):19228-19236. doi: 10.1073/pnas.2006526117. Epub 2020 Jul 23.

本文引用的文献

2
High-speed crystal detection and characterization using a fast-readout detector.使用快速读出探测器进行高速晶体检测与表征
Acta Crystallogr D Biol Crystallogr. 2010 Sep;66(Pt 9):1032-5. doi: 10.1107/S0907444910028192. Epub 2010 Aug 13.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验