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利用粉末 X 射线衍射进行结构生物学中的直接结构测定:P2X4 受体运输基序 YEQGL。

Exploiting powder X-ray diffraction for direct structure determination in structural biology: the P2X4 receptor trafficking motif YEQGL.

机构信息

School of Chemistry, Cardiff University, Park Place, Wales, United Kingdom.

出版信息

J Struct Biol. 2011 Jun;174(3):461-7. doi: 10.1016/j.jsb.2011.03.001. Epub 2011 Mar 5.

DOI:10.1016/j.jsb.2011.03.001
PMID:21382498
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3121957/
Abstract

We report the crystal structure of the 5-residue peptide acetyl-YEQGL-amide, determined directly from powder X-ray diffraction data recorded on a conventional laboratory X-ray powder diffractometer. The YEQGL motif has a known biological role, as a trafficking motif in the C-terminus of mammalian P2X4 receptors. Comparison of the crystal structure of acetyl-YEQGL-amide determined here and that of a complex formed with the μ2 subunit of the clathrin adaptor protein complex AP2 reported previously, reveals differences in conformational properties, although there are nevertheless similarities concerning aspects of the hydrogen-bonding arrangement and the hydrophobic environment of the leucine sidechain. Our results demonstrate the potential for exploiting modern powder X-ray diffraction methodology to achieve complete structure determination of materials of biological interest that do not crystallize as single crystals of suitable size and quality for single-crystal X-ray diffraction.

摘要

我们报告了 5 残基肽乙酰-YEQGL-酰胺的晶体结构,该结构是直接从常规实验室 X 射线粉末衍射仪上记录的粉末 X 射线衍射数据中确定的。YEQGL 基序具有已知的生物学作用,作为哺乳动物 P2X4 受体 C 末端的运输基序。这里确定的乙酰-YEQGL-酰胺的晶体结构与以前报道的网格蛋白衔接蛋白复合物 AP2 的 μ2 亚基形成的复合物的晶体结构进行比较,揭示了构象特性的差异,尽管在氢键排列和亮氨酸侧链的疏水环境方面仍然存在相似之处。我们的结果表明,利用现代粉末 X 射线衍射方法来实现对生物感兴趣的材料的完整结构测定具有潜力,这些材料不能结晶成适合于单晶 X 射线衍射的单晶,且尺寸和质量合适。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/44c4af59f476/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/a74b5a65e534/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/14b762d9405d/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/6c0e14b9becd/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/44c4af59f476/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/a74b5a65e534/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/14b762d9405d/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/6c0e14b9becd/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/3121957/44c4af59f476/gr4.jpg

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本文引用的文献

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Structure of haemoglobin: a three-dimensional Fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis.血红蛋白的结构:通过X射线分析获得的分辨率为5.5埃的三维傅里叶合成。
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Structure determination from powder diffraction data.由粉末衍射数据确定结构。
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