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通过虚拟高通量筛选鉴定潜在的钩端螺旋体磷酸庚糖异构酶抑制剂。

Identification of potential Leptospira phosphoheptose isomerase inhibitors through virtual high-throughput screening.

机构信息

SVIMS Bioinformatics Centre, SVIMS University, Tirupati 517507, India.

出版信息

Genomics Proteomics Bioinformatics. 2010 Dec;8(4):246-55. doi: 10.1016/S1672-0229(10)60026-5.

Abstract

The life-threatening infections caused by Leptospira serovars demand the need for designing anti-leptospirosis drugs. The present study encompasses exploring inhibitors against phosphoheptose isomerase (GmhA) of Leptospira, which is vital for lipopolysaccharide (LPS) biosynthesis and is identified as a common drug target through the subtractive genomic approach. GmhA model was built in Modeller 9v7. Structural refinement and energy minimization of the predicted model was carried out using Maestro 9.0. The refined model reliability was assessed through Procheck, ProSA, ProQ and Profile 3D. The substrate-based virtual high-throughput screening (VHTS) in Ligand. Info Meta-Database tool generated an in-house library of 354 substrate structural analogs. Furthermore, structure-based VHTS from the in-house library with different conformations of each ligand provided 14 novel competitive inhibitors. The model together with insight gained from the VHTS would be a promising starting point for developing anti-leptospirosis competitive inhibitors targeting LPS biosynthesis pathway.

摘要

钩端螺旋体血清型引起的危及生命的感染需要设计抗钩端螺旋体病的药物。本研究包括探索针对钩端螺旋体磷酸庚糖异构酶(GmhA)的抑制剂,该酶对于脂多糖(LPS)生物合成至关重要,并且通过消减基因组方法被鉴定为共同的药物靶标。使用 Modeller 9v7 构建了 GmhA 模型。使用 Maestro 9.0 对预测模型进行结构细化和能量最小化。通过 Procheck、ProSA、ProQ 和 Profile 3D 评估了经过细化的模型的可靠性。在 Ligand.Info Meta-Database 工具中进行基于底物的虚拟高通量筛选(VHTS),生成了 354 种底物结构类似物的内部库。此外,使用内部库中每个配体的不同构象进行基于结构的 VHTS,提供了 14 种新型竞争性抑制剂。该模型以及从 VHTS 获得的见解将成为开发针对 LPS 生物合成途径的抗钩端螺旋体病竞争性抑制剂的有前途的起点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/48b0/5054147/401fb2912fd3/gr1.jpg

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