Suppr超能文献

ADP-ribosylhydrolase 3 对 O-乙酰基-ADP-核糖异构体的水解作用。

Hydrolysis of O-acetyl-ADP-ribose isomers by ADP-ribosylhydrolase 3.

机构信息

Cardiovascular and Pulmonary Branch, NHLBI, National Institutes of Health, Bethesda, Maryland 20892, USA.

出版信息

J Biol Chem. 2011 Jun 17;286(24):21110-7. doi: 10.1074/jbc.M111.237636. Epub 2011 Apr 17.

Abstract

O-acetyl-ADP-ribose (OAADPr), produced by the Sir2-catalyzed NAD(+)-dependent histone/protein deacetylase reaction, regulates diverse biological processes. Interconversion between two OAADPr isomers with acetyl attached to the C-2″ and C-3″ hydroxyl of ADP-ribose (ADPr) is rapid. We reported earlier that ADP-ribosylhydrolase 3 (ARH3), one of three ARH proteins sharing structural similarities, hydrolyzed OAADPr to ADPr and acetate, and poly(ADPr) to ADPr monomers. ARH1 also hydrolyzed OAADPr and poly(ADPr) as well as ADP-ribose-arginine, with arginine in α-anomeric linkage to C-1″ of ADP-ribose. Because both ARH3- and ARH1-catalyzed reactions involve nucleophilic attacks at the C-1″ position, it was perplexing that the ARH3 catalytic site would cleave OAADPr at either the 2″- or 3″-position, and we postulated the existence of a third isomer, 1″-OAADPr, in equilibrium with 2″- and 3″-isomers. A third isomer, consistent with 1″-OAADPr, was identified at pH 9.0. Further, ARH3 OAADPr hydrolase activity was greater at pH 9.0 than at neutral pH where 3″-OAADPr predominated. Consistent with our hypothesis, IC(50) values for ARH3 inhibition by 2″- and 3″-N-acetyl-ADPr analogs of OAADPr were significantly higher than that for ADPr. ARH1 also hydrolyzed OAADPr more rapidly at alkaline pH, but cleavage of ADP-ribose-arginine was faster at neutral pH than pH 9.0. ARH3-catalyzed hydrolysis of OAADPr in H(2)(18)O resulted in incorporation of one (18)O into ADP-ribose by mass spectrometric analysis, consistent with cleavage at the C-1″ position. Together, these data suggest that ARH family members, ARH1 and ARH3, catalyze hydrolysis of the 1″-O linkage in their structurally diverse substrates.

摘要

O-乙酰基-ADP-核糖(OAADPr)由 Sir2 催化的 NAD(+)依赖性组蛋白/蛋白去乙酰化酶反应产生,调节多种生物过程。OAADPr 两种异构体之间的互变,其中乙酰基连接到 ADPr 的 C-2″和 C-3″羟基,速度很快。我们之前报道过,ADP-核糖基水解酶 3(ARH3)是三种具有结构相似性的 ARH 蛋白之一,可将 OAADPr 水解为 ADPr 和醋酸盐,以及多聚(ADPr)为 ADPr 单体。ARH1 也水解 OAADPr 和多聚(ADPr)以及 ADP-核糖-精氨酸,其中精氨酸与 ADPr 的 C-1″以α-端基异构形式连接。由于 ARH3 和 ARH1 催化的反应都涉及在 C-1″位置的亲核攻击,因此令人费解的是,ARH3 催化位点会在 2″-或 3″-位置切割 OAADPr,我们推测存在第三种异构体,即与 2″-和 3″-异构体处于平衡状态的 1″-OAADPr。在 pH9.0 时,发现了一种与 1″-OAADPr 一致的第三种异构体。此外,ARH3 OAADPr 水解酶活性在 pH9.0 时大于中性 pH,此时 3″-OAADPr 占优势。与我们的假设一致,ARH3 对 OAADPr 的 2″-和 3″-N-乙酰基-ADPr 类似物的抑制 IC(50)值明显高于 ADPr。ARH1 也在碱性 pH 下更快地水解 OAADPr,但在中性 pH 下比在 pH9.0 下更快地水解 ADP-核糖-精氨酸。ARH3 催化的 OAADPr 在 H(2)(18)O 中的水解导致质谱分析中 ADPr 掺入一个(18)O,这与在 C-1″位置的裂解一致。总的来说,这些数据表明,ARH 家族成员 ARH1 和 ARH3 催化其结构多样的底物中 1″-O 键的水解。

相似文献

1
Hydrolysis of O-acetyl-ADP-ribose isomers by ADP-ribosylhydrolase 3.
J Biol Chem. 2011 Jun 17;286(24):21110-7. doi: 10.1074/jbc.M111.237636. Epub 2011 Apr 17.
2
ADP-Ribosyl-Acceptor Hydrolase Activities Catalyzed by the ARH Family of Proteins.
Methods Mol Biol. 2018;1813:187-204. doi: 10.1007/978-1-4939-8588-3_12.
3
The 39-kDa poly(ADP-ribose) glycohydrolase ARH3 hydrolyzes O-acetyl-ADP-ribose, a product of the Sir2 family of acetyl-histone deacetylases.
Proc Natl Acad Sci U S A. 2006 Nov 7;103(45):16687-91. doi: 10.1073/pnas.0607911103. Epub 2006 Oct 30.
4
ARH Family of ADP-Ribose-Acceptor Hydrolases.
Cells. 2022 Nov 30;11(23):3853. doi: 10.3390/cells11233853.
5
Function and metabolism of sirtuin metabolite O-acetyl-ADP-ribose.
Biochim Biophys Acta. 2010 Aug;1804(8):1617-25. doi: 10.1016/j.bbapap.2010.02.007. Epub 2010 Feb 20.
6
Structure and function of the ARH family of ADP-ribosyl-acceptor hydrolases.
DNA Repair (Amst). 2014 Nov;23:88-94. doi: 10.1016/j.dnarep.2014.03.005. Epub 2014 Apr 18.
8
Identification and characterization of a mammalian 39-kDa poly(ADP-ribose) glycohydrolase.
J Biol Chem. 2006 Jan 13;281(2):705-13. doi: 10.1074/jbc.M510290200. Epub 2005 Nov 8.
9
Structural insights into the mechanism of Escherichia coli YmdB: A 2'-O-acetyl-ADP-ribose deacetylase.
J Struct Biol. 2015 Dec;192(3):478-486. doi: 10.1016/j.jsb.2015.10.010. Epub 2015 Oct 19.
10
Structure-function analyses reveal the mechanism of the ARH3-dependent hydrolysis of ADP-ribosylation.
J Biol Chem. 2018 Sep 14;293(37):14470-14480. doi: 10.1074/jbc.RA118.004284. Epub 2018 Jul 25.

引用本文的文献

2
Insights into mechanisms of ubiquitin ADP-ribosylation reversal.
Biochem Soc Trans. 2024 Dec 19;52(6):2525-2537. doi: 10.1042/BST20240896.
3
ADP-ribose hydrolases: biological functions and potential therapeutic targets.
Expert Rev Mol Med. 2024 Oct 8;26:e21. doi: 10.1017/erm.2024.17.
4
ARH Family of ADP-Ribose-Acceptor Hydrolases.
Cells. 2022 Nov 30;11(23):3853. doi: 10.3390/cells11233853.
5
Functional roles of ADP-ribosylation writers, readers and erasers.
Front Cell Dev Biol. 2022 Aug 11;10:941356. doi: 10.3389/fcell.2022.941356. eCollection 2022.
6
NAD Degrading Enzymes, Evidence for Roles During Infection.
Front Mol Biosci. 2021 Aug 16;8:697359. doi: 10.3389/fmolb.2021.697359. eCollection 2021.
7
Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal.
Nat Commun. 2021 Jul 28;12(1):4581. doi: 10.1038/s41467-021-24723-3.
9
ADP-ribosylation of RNA and DNA: from in vitro characterization to in vivo function.
Nucleic Acids Res. 2021 Apr 19;49(7):3634-3650. doi: 10.1093/nar/gkab136.
10
ARH1 in Health and Disease.
Cancers (Basel). 2020 Feb 19;12(2):479. doi: 10.3390/cancers12020479.

本文引用的文献

1
Hydrolase regulates NAD+ metabolites and modulates cellular redox.
J Biol Chem. 2009 Apr 24;284(17):11256-66. doi: 10.1074/jbc.M809790200. Epub 2009 Feb 27.
2
Synthesis and biochemical evaluation of O-acetyl-ADP-ribose and N-acetyl analogs.
Org Biomol Chem. 2007 Oct 7;5(19):3087-91. doi: 10.1039/b710231c. Epub 2007 Sep 4.
4
Enhanced sensitivity to cholera toxin in ADP-ribosylarginine hydrolase-deficient mice.
Mol Cell Biol. 2007 Aug;27(15):5534-43. doi: 10.1128/MCB.00302-07. Epub 2007 May 25.
5
The 39-kDa poly(ADP-ribose) glycohydrolase ARH3 hydrolyzes O-acetyl-ADP-ribose, a product of the Sir2 family of acetyl-histone deacetylases.
Proc Natl Acad Sci U S A. 2006 Nov 7;103(45):16687-91. doi: 10.1073/pnas.0607911103. Epub 2006 Oct 30.
6
Metabolite of SIR2 reaction modulates TRPM2 ion channel.
J Biol Chem. 2006 May 19;281(20):14057-65. doi: 10.1074/jbc.M513741200. Epub 2006 Mar 24.
8
Identification and characterization of a mammalian 39-kDa poly(ADP-ribose) glycohydrolase.
J Biol Chem. 2006 Jan 13;281(2):705-13. doi: 10.1074/jbc.M510290200. Epub 2005 Nov 8.
9
Splicing regulates NAD metabolite binding to histone macroH2A.
Nat Struct Mol Biol. 2005 Jul;12(7):624-5. doi: 10.1038/nsmb956. Epub 2005 Jun 19.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验