Tian Sun, Huang Qingsheng, Fang Ying, Wu Jianhua
Institute of Biomechanics, School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510006, China; E-Mails:
Int J Mol Sci. 2011 Feb 8;12(2):1060-5. doi: 10.3390/ijms12021060.
FurinDB (freely available online at http://www.nuolan.net/substrates.html) is a database of furin substrates. This database includes experimentally verified furin cleavage sites, substrates, species, experimental methods, original publications of experiments and associated drugs targeting furin substrates. The current database release contains 126 furin cleavage sites from three species: mammals, bacteria and viruses. A main feature of this database is that all furin cleavage sites are recorded as a 20-residue motif, including one core region (eight amino acids, P6-P2') and two flanking solvent accessible regions (eight amino acids, P7-P14, and four amino acids, P3'-P6'), that represent our current understanding of the molecular biology of furin cleavage. This database is important for understanding the molecular evolution and relationships between sequence motifs, 3D structures, cellular functions and physical properties required by furin for cleavage, and for elucidating the molecular mechanisms and the progression of furin cleavage associated human diseases, including pathogenic infections, neurological disorders, tumorigenesis, tumor invasion, angiogenesis, and metastasis. FurinDB database will be a solid addition to the publicly available infrastructure for scientists in the field of molecular biology.
弗林蛋白酶数据库(可在http://www.nuolan.net/substrates.html免费在线获取)是一个关于弗林蛋白酶底物的数据库。该数据库包括经实验验证的弗林蛋白酶切割位点、底物、物种、实验方法、实验的原始出版物以及针对弗林蛋白酶底物的相关药物。当前版本的数据库包含来自哺乳动物、细菌和病毒这三种物种的126个弗林蛋白酶切割位点。该数据库的一个主要特点是,所有弗林蛋白酶切割位点都记录为一个20个残基的基序,包括一个核心区域(八个氨基酸,P6 - P2')和两个侧翼溶剂可及区域(八个氨基酸,P7 - P14,以及四个氨基酸,P3' - P6'),这代表了我们目前对弗林蛋白酶切割分子生物学的理解。该数据库对于理解弗林蛋白酶切割所需的分子进化以及序列基序、三维结构、细胞功能和物理性质之间的关系,以及阐明与弗林蛋白酶切割相关的人类疾病(包括致病性感染、神经疾病、肿瘤发生、肿瘤侵袭、血管生成和转移)的分子机制和进展具有重要意义。弗林蛋白酶数据库将是分子生物学领域科学家公开可用基础设施的有力补充。