• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

量子化学模拟 1H NMR 谱。2. 基于 DFT 的计算有机分子质子-质子偶合常数的程序比较。

Quantum-chemical simulation of 1H NMR spectra. 2. Comparison of DFT-based procedures for computing proton-proton coupling constants in organic molecules.

机构信息

Department of Chemistry, University of Fribourg, CH-1700 Fribourg, Switzerland.

出版信息

J Org Chem. 2011 Jun 17;76(12):4818-30. doi: 10.1021/jo200513q. Epub 2011 May 16.

DOI:10.1021/jo200513q
PMID:21574622
Abstract

The performance of 250 different computational protocols (combinations of density functionals, basis sets and methods) was assessed on a set of 165 well-established experimental (1)H-(1)H nuclear coupling constants (J(H-H)) from 65 molecules spanning a wide range of "chemical space". Thereby we found that, if one uses core-augmented basis sets and allows for linear scaling of the raw results, calculations of only the Fermi contact term yield more accurate predictions than calculations where all four terms that contribute to J(H-H) are evaluated. It turns out that B3LYP/6-31G(d,p)u+1s is the best (and, in addition, one of the most economical) of all tested methods, yielding predictions of J(H-H) with a root-mean-square deviation from experiment of less than 0.5 Hz for our test set. Another method that does similarly well, without the need for additional 1s basis functions, is B3LYP/cc-pVTZ, which is, however, ca. 8 times more "expensive" in terms of CPU time. A selection of the better methods was tested on a probe set comprising 61 J(H-H) values from 37 molecules. In this set we also included five molecules where conformational averaging is required. The rms deviations were better than or equal to those with the training set, which indicates that the method we recommend is generally applicable for organic molecules. We give instructions on how to carry out calculations of (1)H chemical shifts and J(H-H) most economically and provide scripts to extract the relevant information from the outputs of calculations with the Gaussian program in clearly arranged form, e.g., to feed them into programs for simulating entire (1)H NMR spectra.

摘要

评估了 250 种不同计算方案(密度泛函、基组和方法的组合)在 65 个分子的 165 个广泛的“化学空间”内得到的实验(1)H-(1)H 核偶合常数(J(H-H))数据集上的性能。因此,我们发现,如果使用核修正基组并允许原始结果线性缩放,则仅计算费米接触项的计算比评估贡献 J(H-H)的所有四个项的计算可以产生更准确的预测。事实证明,B3LYP/6-31G(d,p)u+1s 是所有测试方法中最好的(而且,除此之外,也是最经济的方法之一),对于我们的测试集,它可以使 J(H-H)的预测值与实验值的均方根偏差小于 0.5 Hz。另一种方法是 B3LYP/cc-pVTZ,它不需要额外的 1s 基函数,但效果也类似,只是在 CPU 时间方面要多 8 倍。我们在包含 37 个分子的 61 个 J(H-H)值的探针集上测试了一组更好的方法。在这个集合中,我们还包括了五个需要构象平均的分子。均方根偏差优于或等于训练集,这表明我们推荐的方法通常适用于有机分子。我们提供了如何最经济地进行(1)H 化学位移和 J(H-H)计算的说明,并提供了脚本,以便以清晰的格式从 Gaussian 程序的计算输出中提取相关信息,例如,将它们输入到用于模拟整个(1)H NMR 谱的程序中。

相似文献

1
Quantum-chemical simulation of 1H NMR spectra. 2. Comparison of DFT-based procedures for computing proton-proton coupling constants in organic molecules.量子化学模拟 1H NMR 谱。2. 基于 DFT 的计算有机分子质子-质子偶合常数的程序比较。
J Org Chem. 2011 Jun 17;76(12):4818-30. doi: 10.1021/jo200513q. Epub 2011 May 16.
2
Calculating accurate proton chemical shifts of organic molecules with density functional methods and modest basis sets.使用密度泛函方法和适度基组计算有机分子的精确质子化学位移。
J Org Chem. 2009 Jun 5;74(11):4017-23. doi: 10.1021/jo900482q.
3
Ab initio and density functional theory reinvestigation of gas-phase sulfuric acid monohydrate and ammonium hydrogen sulfate.从头算和密度泛函理论对气相一水合硫酸和硫酸氢铵的再研究。
J Phys Chem A. 2006 Jun 8;110(22):7178-88. doi: 10.1021/jp0613081.
4
From CCSD(T)/aug-cc-pVTZ-J to CCSD(T) complete basis set limit isotropic nuclear magnetic shieldings via affordable DFT/CBS calculations.从 CCSD(T)/aug-cc-pVTZ-J 到 CCSD(T)完全基组极限各向同性核磁屏蔽的经济 DFT/CBS 计算。
Magn Reson Chem. 2011 May;49(5):231-6. doi: 10.1002/mrc.2738. Epub 2011 Mar 9.
5
Regression formulas for density functional theory calculated 1H and 13C NMR chemical shifts in toluene-d8.密度泛函理论计算的 1H 和 13C NMR 化学位移在氘代甲苯中的回归公式。
J Phys Chem A. 2011 Nov 10;115(44):12364-72. doi: 10.1021/jp2060975. Epub 2011 Oct 18.
6
NMR spectra, GIAO and charge density calculations of five-membered aromatic heterocycles.五元芳香杂环的核磁共振光谱、GIAO及电荷密度计算
Magn Reson Chem. 2007 Jul;45(7):532-43. doi: 10.1002/mrc.1967.
7
Relativistic force field: parametric computations of proton-proton coupling constants in (1)H NMR spectra.相对论力场:(1)H NMR谱中质子-质子耦合常数的参数计算
J Org Chem. 2014 Sep 5;79(17):8397-406. doi: 10.1021/jo501781b. Epub 2014 Aug 26.
8
Basis set convergence of indirect spin-spin coupling constants in the Kohn-Sham limit for several small molecules.在 Kohn-Sham 极限下几个小分子的间接自旋-自旋耦合常数的基组收敛性。
J Phys Chem A. 2012 Apr 12;116(14):3728-38. doi: 10.1021/jp212588h. Epub 2012 Mar 29.
9
NMR chemical shielding and spin-spin coupling constants of liquid NH3: a systematic investigation using the sequential QM/MM method.液体氨的 NMR 化学位移和自旋-自旋耦合常数:使用顺序 QM/MM 方法的系统研究。
J Phys Chem A. 2009 Dec 31;113(52):14936-42. doi: 10.1021/jp9050484.
10
DFT studies of the conformational/structural dependencies of geminal 1H,1H scalar coupling 2J(H,H') in substituted methanes.取代甲烷中偕偶1H,1H标量耦合2J(H,H')的构象/结构依赖性的密度泛函理论研究
Magn Reson Chem. 2007 Aug;45(8):634-46. doi: 10.1002/mrc.2018.

引用本文的文献

1
Cytotoxic Stilbenoids, Hetero- and Homodimers of Homoisoflavonoids from .来自……的细胞毒性茋类化合物、异黄酮和同黄酮的异二聚体及同二聚体 。 (原文不完整,此为按要求翻译的内容)
J Nat Prod. 2025 Feb 28;88(2):458-468. doi: 10.1021/acs.jnatprod.4c01263. Epub 2025 Jan 24.
2
Influence of Selective Deoxyfluorination on the Molecular Structure of Type-2 -Acetyllactosamine.选择性脱氧氟代作用对 2-乙酰乳糖胺型结构的影响。
J Org Chem. 2024 Sep 6;89(17):11875-11890. doi: 10.1021/acs.joc.4c00879. Epub 2024 Aug 23.
3
Bent naphthodithiophenes: synthesis and characterization of isomeric fluorophores.
弯曲萘并二噻吩:异构荧光团的合成与表征
RSC Adv. 2024 Aug 12;14(35):25120-25129. doi: 10.1039/d4ra04850d.
4
Deconvolution and Analysis of the H NMR Spectra of Crude Reaction Mixtures.粗反应混合物的¹H NMR谱的去卷积与分析
J Chem Inf Model. 2024 Apr 22;64(8):3008-3020. doi: 10.1021/acs.jcim.3c01864. Epub 2024 Apr 4.
5
A Comprehensive Computational NMR Analysis of Organic Polyarsenicals including the Marine Sponge-Derived Arsenicins A-D and Their Synthetic Analogs.有机多砷化合物的综合计算 NMR 分析,包括海洋海绵衍生的砷菌素 A-D 及其合成类似物。
Mar Drugs. 2023 Sep 27;21(10):511. doi: 10.3390/md21100511.
6
Rapid prediction of full spin systems using uncertainty-aware machine learning.使用不确定性感知机器学习对全自旋系统进行快速预测。
Chem Sci. 2023 Sep 15;14(39):10902-10913. doi: 10.1039/d3sc01930f. eCollection 2023 Oct 11.
7
Combined NMR Spectroscopy and Quantum-Chemical Calculations in Fluorescent 1,2,3-Triazole-4-carboxylic Acids Fine Structures Analysis.结合核磁共振光谱和量子化学计算分析荧光 1,2,3-三唑-4-羧酸的精细结构。
Int J Mol Sci. 2023 May 18;24(10):8947. doi: 10.3390/ijms24108947.
8
Challenging Structure Elucidation of Lumnitzeralactone, an Ellagic Acid Derivative from the Mangrove .挑战结构阐明来自红树植物的鞣花酸衍生物 Lumnitzeralactone。
Mar Drugs. 2023 Apr 14;21(4):242. doi: 10.3390/md21040242.
9
Anti-SARS-CoV-2 Activity and Cytotoxicity of Amaryllidaceae Alkaloids from .冬凌草甲素等石蒜科生物碱抗 SARS-CoV-2 活性及细胞毒性研究
Molecules. 2023 Apr 4;28(7):3222. doi: 10.3390/molecules28073222.
10
Improving the accuracy of P NMR chemical shift calculations by use of scaling methods.通过使用标度方法提高磷核磁共振化学位移计算的准确性。
Beilstein J Org Chem. 2023 Jan 10;19:36-56. doi: 10.3762/bjoc.19.4. eCollection 2023.