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在涉及分子识别的泛素表面斑块中存在弱的长程相关运动。

Weak long-range correlated motions in a surface patch of ubiquitin involved in molecular recognition.

机构信息

Joint BSC-IRB Research Programme in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), Parc Científic de Barcelona, Baldiri Reixac 10, 08028 Barcelona, Spain.

出版信息

J Am Chem Soc. 2011 Jul 13;133(27):10336-9. doi: 10.1021/ja200461n. Epub 2011 Jun 20.

Abstract

Long-range correlated motions in proteins are candidate mechanisms for processes that require information transfer across protein structures, such as allostery and signal transduction. However, the observation of backbone correlations between distant residues has remained elusive, and only local correlations have been revealed using residual dipolar couplings measured by NMR spectroscopy. In this work, we experimentally identified and characterized collective motions spanning four β-strands separated by up to 15 Å in ubiquitin. The observed correlations link molecular recognition sites and result from concerted conformational changes that are in part mediated by the hydrogen-bonding network.

摘要

蛋白质中的长程相关运动是需要在蛋白质结构之间传递信息的过程的候选机制,例如别构和信号转导。然而,一直难以观察到远距离残基之间的骨架相关性,并且仅使用通过 NMR 光谱测量的残基偶极耦合来揭示局部相关性。在这项工作中,我们通过实验鉴定和表征了泛素中跨越四个β-折叠的集体运动,这些β-折叠之间的距离最远可达 15Å。观察到的相关性将分子识别位点联系起来,并且是由部分通过氢键网络介导的协同构象变化引起的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef0b/3686050/93a0b2f2fe00/ja-2011-00461n_0004.jpg

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