1] Joint BSC-CRG-IRB Research Programme in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Spain [2].
Joint BSC-CRG-IRB Research Programme in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Spain.
Nat Commun. 2014 Jun 11;5:4070. doi: 10.1038/ncomms5070.
Correlated motions in proteins can mediate fundamental biochemical processes such as signal transduction and allostery. The mechanisms that underlie these processes remain largely unknown due mainly to limitations in their direct detection. Here, based on a detailed analysis of protein structures deposited in the protein data bank, as well as on state-of-the art molecular simulations, we provide general evidence for the transfer of structural information by correlated backbone motions, mediated by hydrogen bonds, across β-sheets. We also show that the observed local and long-range correlated motions are mediated by the collective motions of β-sheets and investigate their role in large-scale conformational changes. Correlated motions represent a fundamental property of β-sheets that contributes to protein function.
蛋白质中的相关运动可以介导基本的生化过程,如信号转导和变构。由于直接检测的限制,这些过程的机制在很大程度上仍然未知。在这里,我们基于对蛋白质数据库中储存的蛋白质结构的详细分析,以及最先进的分子模拟,提供了通过氢键介导的β-折叠中结构信息通过相关骨架运动传递的一般证据。我们还表明,观察到的局部和远程相关运动是由β-折叠的集体运动介导的,并研究了它们在大规模构象变化中的作用。相关运动是β-折叠的一个基本特性,有助于蛋白质的功能。