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FimD usher 与其同源 FimC-FimH 底物结合的晶体结构。

Crystal structure of the FimD usher bound to its cognate FimC-FimH substrate.

机构信息

Institute of Structural and Molecular Biology, University College London and Birkbeck College, Malet Street, London WC1E 7HX, UK.

出版信息

Nature. 2011 Jun 2;474(7349):49-53. doi: 10.1038/nature10109.

DOI:10.1038/nature10109
PMID:21637253
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3162478/
Abstract

Type 1 pili are the archetypal representative of a widespread class of adhesive multisubunit fibres in Gram-negative bacteria. During pilus assembly, subunits dock as chaperone-bound complexes to an usher, which catalyses their polymerization and mediates pilus translocation across the outer membrane. Here we report the crystal structure of the full-length FimD usher bound to the FimC-FimH chaperone-adhesin complex and that of the unbound form of the FimD translocation domain. The FimD-FimC-FimH structure shows FimH inserted inside the FimD 24-stranded β-barrel translocation channel. FimC-FimH is held in place through interactions with the two carboxy-terminal periplasmic domains of FimD, a binding mode confirmed in solution by electron paramagnetic resonance spectroscopy. To accommodate FimH, the usher plug domain is displaced from the barrel lumen to the periplasm, concomitant with a marked conformational change in the β-barrel. The amino-terminal domain of FimD is observed in an ideal position to catalyse incorporation of a newly recruited chaperone-subunit complex. The FimD-FimC-FimH structure provides unique insights into the pilus subunit incorporation cycle, and captures the first view of a protein transporter in the act of secreting its cognate substrate.

摘要

I 型菌毛是革兰氏阴性菌中广泛存在的一类黏附性多亚基纤维的典型代表。在菌毛组装过程中,亚基作为伴侣结合复合物与 usher 对接, usher 催化其聚合并介导菌毛穿过外膜的转运。在这里,我们报告了全长 FimD usher 与 FimC-FimH 伴侣-黏附素复合物的晶体结构,以及未结合形式的 FimD 转运结构域的晶体结构。FimD-FimC-FimH 结构显示 FimH 插入 FimD 的 24 股β-桶转运通道内。FimC-FimH 通过与 FimD 的两个羧基末端周质域相互作用而保持在原位,这种结合模式在溶液中通过电子顺磁共振波谱得到证实。为了容纳 FimH,usher 塞结构域从桶腔移位到周质,同时β-桶发生明显的构象变化。FimD 的氨基末端结构域被观察到处于理想位置,以催化新募集的伴侣-亚基复合物的掺入。FimD-FimC-FimH 结构提供了菌毛亚基掺入循环的独特见解,并首次观察到蛋白转运体分泌其同源底物的过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/3a20c1c451d6/ukmss-36012-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/2cc946803dd8/ukmss-36012-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/7efbd66e94ff/ukmss-36012-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/28b818166a54/ukmss-36012-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/3a20c1c451d6/ukmss-36012-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/2cc946803dd8/ukmss-36012-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/7efbd66e94ff/ukmss-36012-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/28b818166a54/ukmss-36012-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa77/3162478/3a20c1c451d6/ukmss-36012-f0004.jpg

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本文引用的文献

1
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2
Rotamer libraries of spin labelled cysteines for protein studies.用于蛋白质研究的自旋标记半胱氨酸的构象文库。
Phys Chem Chem Phys. 2011 Feb 14;13(6):2356-66. doi: 10.1039/c0cp01865a. Epub 2010 Nov 30.
3
Structural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting.通过指套样β 片层扭曲对黏附素 FimH 的机械力调节的结构基础
从“分子机器”视角对粘性细菌细胞表面附属物进行结构剖析。
J Bacteriol. 2024 Dec 19;206(12):e0029024. doi: 10.1128/jb.00290-24. Epub 2024 Nov 5.
4
Structural basis for adhesin secretion by the outer-membrane usher in type 1 pili.外膜 usher 型 1 菌毛黏附素分泌的结构基础。
Proc Natl Acad Sci U S A. 2024 Oct;121(40):e2410594121. doi: 10.1073/pnas.2410594121. Epub 2024 Sep 24.
5
The assembly platform FimD is required to obtain the most stable quaternary structure of type 1 pili.装配平台 FimD 需要获得 1 型菌毛最稳定的四级结构。
Nat Commun. 2024 Apr 8;15(1):3032. doi: 10.1038/s41467-024-47212-9.
6
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Methods Mol Biol. 2024;2778:1-30. doi: 10.1007/978-1-0716-3734-0_1.
7
Stochastic chain termination in bacterial pilus assembly.细菌菌毛组装中的随机链终止。
Nat Commun. 2023 Nov 24;14(1):7718. doi: 10.1038/s41467-023-43449-y.
8
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7
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Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):22-5. doi: 10.1107/S0907444909042589. Epub 2009 Dec 21.
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