Department of Theoretical and Computational Molecular Science, Institute for Molecular Science, Okazaki 444-8585, Japan.
J Comput Chem. 2011 Oct;32(13):2756-64. doi: 10.1002/jcc.21855. Epub 2011 Jul 5.
A two-level hierarchical parallelization scheme including the second-order Møller-Plesset perturbation (MP2) theory in the divide-and-conquer method is presented. The scheme is a combination of coarse-grain parallelization assigning each subsystem to a group of processors, with fine-grain parallelization, where the computational tasks for evaluating MP2 correlation energy of the assigned subsystem are distributed among processors in the group. Test calculations demonstrate that the present scheme shows high parallel efficiency and makes MP2 calculations practical for very large molecules.
提出了一种两级层次并行化方案,包括分治法中的二阶 Møller-Plesset 微扰 (MP2) 理论。该方案是粗粒度并行化的组合,将每个子系统分配给一组处理器,并进行细粒度并行化,其中分配给子系统的 MP2 相关能量计算任务在组内的处理器之间分配。测试计算表明,本方案具有较高的并行效率,使得 MP2 计算对于非常大的分子变得切实可行。