新费氏游动放线菌 NRRL B-59395 的基因组草图，这是一株胆固醇降解放线菌。
Draft genome sequence of Gordonia neofelifaecis NRRL B-59395, a cholesterol-degrading actinomycete.
机构信息
College of Life Sciences, Sichuan Normal University, Chengdu 610061, People's Republic of China.
出版信息
J Bacteriol. 2011 Sep;193(18):5045-6. doi: 10.1128/JB.05531-11. Epub 2011 Jul 8.
Abstract
We report a draft sequence of the genome of Gordonia neofelifaecis NRRL B-59395, a cholesterol-degrading actinomycete isolated from fresh feces of a clouded leopard (Neofelis nebulosa). As predicted, the reported genome contains several gene clusters for cholesterol degradation. This is the second available genome sequence of the family Gordoniaceae.
摘要
我们报道了从云豹（Neofelis nebulosa）新鲜粪便中分离出的胆固醇降解放线菌 Gordonia neofelifaecis NRRL B-59395 的基因组草图序列。正如预测的那样，报告的基因组包含几个胆固醇降解基因簇。这是 Gordoniaceae 家族的第二个可用基因组序列。
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1
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Stand Genomic Sci. 2010 Jan 28;2(1):19-28. doi: 10.4056/sigs.611106.
2
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3
igr Genes and Mycobacterium tuberculosis cholesterol metabolism.
J Bacteriol. 2009 Aug;191(16):5232-9. doi: 10.1128/JB.00452-09. Epub 2009 Jun 19.
4
Gordonia cholesterolivorans sp. nov., a cholesterol-degrading actinomycete isolated from sewage sludge.
Int J Syst Evol Microbiol. 2009 May;59(Pt 5):1011-5. doi: 10.1099/ijs.0.005777-0.
5
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
6
A gene cluster encoding cholesterol catabolism in a soil actinomycete provides insight into Mycobacterium tuberculosis survival in macrophages.
Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1947-52. doi: 10.1073/pnas.0605728104. Epub 2007 Jan 30.
7
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
8
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9
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