Universidade Federal do Pará. Instituto de Ciências Biológicas, 66075-900 Belém, Pará, Brazil.
Microb Ecol. 2011 Nov;62(4):853-61. doi: 10.1007/s00248-011-9906-8. Epub 2011 Jul 14.
Microbial diversity was evaluated in an anoxic zone of Tucuruí Hydroelectric Power Station reservoir in Brazilian Amazonia using a culture-independent approach by amplifying and sequencing fragments of the 16S rRNA gene using metagenomic DNA as a template. Samples obtained from the photic, aphotic (40 m) and sediment (60 m) layers were used to construct six 16S rDNA libraries containing a total of 1,152 clones. The sediment, aphotic and photic layers presented 64, 33 and 35 unique archaeal operational taxonomic units (OTUs). The estimated richness of these layers was evaluated to be 153, 106 and 79 archaeal OTUs, respectively, using the abundance-based coverage estimator (ACE) and 114, 83 and 77 OTUs using the Chao1 estimator. For bacterial sequences, 114, 69 and 57 OTUs were found in the sediment, aphotic and photic layers, which presented estimated richnesses of 1,414, 522 and 197 OTUs (ACE) and 1,059, 1,014 and 148 OTUs (Chao1), respectively. Phylogenetic analyses of the sequences obtained revealed a high richness of microorganisms which participate in the carbon cycle, namely, methanogenic archaea and methanotrophic proteobacteria. Most sequences obtained belong to non-culturable prokaryotes. The present study offers the first glimpse of the huge microbial diversity of an anoxic area of a man-made lacustrine environment in the tropics.
本研究采用无培养方法,利用宏基因组 DNA 作为模板扩增和测序 16S rRNA 基因片段,评估了巴西亚马逊地区图库里鲁水电站水库缺氧区的微生物多样性。从透光层、无光层(40 m)和沉积物层(60 m)采集样本,构建了 6 个 16S rDNA 文库,共包含 1152 个克隆。沉积物、无光层和透光层分别具有 64、33 和 35 个独特的古菌分类操作单元(OTU)。使用基于丰度的覆盖估计器(ACE)和 Chao1 估计器,分别估计这些层的丰富度为 153、106 和 79 个古菌 OTU。对于细菌序列,在沉积物、无光层和透光层中分别发现了 114、69 和 57 个 OTU,其 ACE 和 Chao1 估计的丰富度分别为 1414、522 和 197 OTU 和 1059、1014 和 148 OTU。获得的序列的系统发育分析显示,参与碳循环的微生物具有很高的丰富度,即产甲烷古菌和甲烷营养型变形菌。大多数获得的序列属于不可培养的原核生物。本研究首次揭示了热带人为湖泊环境缺氧区中巨大微生物多样性的一瞥。