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太平洋海神菌属,新属, 海生浅沙新菌,新种, 海洋α-变形菌纲的新种,来自日本海的浅层沙质沉积物。

Poseidonocella pacifica gen. nov., sp. nov. and Poseidonocella sedimentorum sp. nov., novel alphaproteobacteria from the shallow sandy sediments of the Sea of Japan.

机构信息

Pacific Institute of Bioorganic Chemistry, Far-Eastern Branch, Russian Academy of Sciences, Prospect 100 Let Vladivostoku, 159, 690022 Vladivostok, Russia.

出版信息

Arch Microbiol. 2012 Feb;194(2):113-21. doi: 10.1007/s00203-011-0736-3. Epub 2011 Jul 29.

DOI:10.1007/s00203-011-0736-3
PMID:21800148
Abstract

The taxonomic study of two Gram-negative, aerobic, non-pigmented bacteria KMM 9010(T) and KMM 9023(T) isolated from a sandy sediment sample collected from the Sea of Japan seashore was performed. On the basis of the nearly complete 16S rRNA gene sequences, strains KMM 9010(T) and KMM 9023(T) clustered with the Roseobacter lineage (class Alphaproteobacteria) forming a distinct phylogenetic line adjacent to the genus Donghicola. Novel strains shared the highest sequence similarity of 96.4% to each other and lower than 96.1% similarities to other validly named genera of the class Alphaproteobacteria. In both strains, ubiquinone Q-10 was found to be the major respiratory quinone; phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidic acid, and an unknown aminolipid were the major polar lipids and C(18:1)ω7c and 11-methyl C(18:1)ω7c were predominant fatty acids. The DNA G+C content was 60.5 mol% (KMM 9010(T)) and 65.4 mol% (KMM 9023(T)). Based on phenotypic properties and phylogenetic evidence, strains KMM 9010(T) and KMM 9023(T) should be classified as two novel species in a new genus, Poseidonocella gen. nov., with Poseidonocella pacifica sp. nov., the type species with the type strain KMM 9010(T) (= NRIC 0794(T) = JCM 17310(T)), and Poseidonocella sedimentorum sp. nov. as the second species with the type strain KMM 9023(T) (= NRIC 0796(T) = JCM 17311(T)).

摘要

对从日本海海滨沙样中分离得到的两株革兰氏阴性、需氧、非色素的细菌 KMM 9010(T)和 KMM 9023(T)进行了分类学研究。根据近全 16S rRNA 基因序列,菌株 KMM 9010(T)和 KMM 9023(T)与玫瑰杆菌群(α-变形菌纲)聚类,形成一个与 Donghicola 属相邻的独特进化枝。新菌株彼此之间的序列相似度最高为 96.4%,与 α-变形菌纲中其他有效命名的属的相似度低于 96.1%。在这两个菌株中,都发现泛醌 Q-10 是主要的呼吸醌;磷脂酰胆碱、磷脂酰甘油、双磷脂酰甘油、磷脂酸和一种未知的氨基脂是主要的极性脂,而 C(18:1)ω7c 和 11-甲基 C(18:1)ω7c 是主要的脂肪酸。DNA G+C 含量分别为 60.5 mol%(KMM 9010(T))和 65.4 mol%(KMM 9023(T))。基于表型特征和系统发育证据,菌株 KMM 9010(T)和 KMM 9023(T)应归类为一个新属的两个新种,即波塞冬菌属 nov.,其中太平洋波塞冬菌 sp. nov.为模式种,模式株为 KMM 9010(T)(=NRIC 0794(T)=JCM 17310(T)),而沉积物波塞冬菌 sp. nov.为第二个种,模式株为 KMM 9023(T)(=NRIC 0796(T)=JCM 17311(T))。

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