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从一个沿海温泉中分离得到的新的鞘氨醇单胞菌属,新种。

Sphingomicrobium lutaoense gen. nov., sp. nov., isolated from a coastal hot spring.

机构信息

Institut für Angewandte Mikrobiologie, Justus-Liebig-Universität Giessen, D-35392 Giessen, Germany.

Yenepoya Research Center, Yenepoya University, University Road, Deralakatee, Mangalore, Karnataka State, India.

出版信息

Int J Syst Evol Microbiol. 2012 Jun;62(Pt 6):1326-1330. doi: 10.1099/ijs.0.034413-0. Epub 2011 Jul 29.

Abstract

A yellowish pigmented, Gram-negative, rod-shaped, non-spore-forming bacterium (strain CC-TBT-3(T)), was isolated on marine agar 2216 from a coastal hot spring of Green Island (Lutao), located off Taituang, Taiwan. 16S rRNA gene sequence analysis of strain CC-TBT-3(T) showed a relatively low similarity (<95.5 %) to representatives of the genera Novosphingobium, Sphingosinicella and Sphingomonas of the Sphingomonadaceae, with the most related strain being the type strain of Novosphingobium soli. In addition to the relatively low 16S rRNA gene sequence similarity to members of established species, the isolate also showed some unique chemotaxonomic features, including the presence of some glycolipids with unusual chromatographic behaviour. The major components of the polar lipid profile were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, sphingoglycolipid and three unidentified glycolipids. The major respiratory quinone was ubiquinone Q-10. The polyamine pattern was characterized by the triamine sym-homospermidine as a major component. Although the predominant fatty acids were C(18:1)ω7c and summed feature 3 (C(16:1)ω7c and/or iso-C(15:0) 2-OH), the isolate did not show the typical hydroxyl fatty acids, such as C(14:0) 2-OH, C(15:0) 2-OH and C(16:0) 2-OH, found in members of the genera Novosphingobium, Sphingomonas and Sphingosinicella, but showed instead high amounts of C(18:1) 2-OH (12.0 %). The DNA G+C content of strain CC-TBT-3(T) was 63.4 mol%. 16S rRNA gene sequence, chemotaxonomic and physiological analyses revealed that strain CC-TBT-3(T) represents a novel species in a new genus in the family Sphingomonadaceae for which the name Sphingomicrobium lutaoense gen. nov., sp. nov. is proposed; the type strain is of the type species S. lutoaense, CC-TBT-3(T) ( = DSM 24194(T) = CCM 7794(T)).

摘要

从台湾绿岛外垵的一个沿海温泉中,在 Marine Agar 2216 上分离到一株呈黄色、革兰氏阴性、杆状、不形成孢子的细菌(菌株 CC-TBT-3(T))。菌株 CC-TBT-3(T) 的 16S rRNA 基因序列分析显示,与黄杆菌科的新鞘氨醇单胞菌属、鞘氨醇单胞菌属和鞘氨醇球菌属的代表种的相似性相对较低(<95.5%),与模式种土壤新鞘氨醇单胞菌的亲缘关系最近。除了与已建立的种成员的相对较低的 16S rRNA 基因序列相似性之外,该分离株还表现出一些独特的化学生物特征,包括具有不寻常色谱行为的一些糖脂的存在。极性脂谱的主要成分是双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、神经酰胺糖脂和三种未鉴定的糖脂。主要呼吸醌是泛醌 Q-10。多胺模式的特征是三胺sym-高丝氨酸作为主要成分。虽然优势脂肪酸是 C(18:1)ω7c 和总和特征 3(C(16:1)ω7c 和/或 iso-C(15:0) 2-OH),但该分离株没有显示出在新鞘氨醇单胞菌属、鞘氨醇单胞菌属和鞘氨醇球菌属的成员中发现的典型羟基脂肪酸,如 C(14:0) 2-OH、C(15:0) 2-OH 和 C(16:0) 2-OH,但相反显示出大量的 C(18:1) 2-OH(12.0%)。菌株 CC-TBT-3(T)的 DNA G+C 含量为 63.4 mol%。16S rRNA 基因序列、化学生物和生理分析表明,菌株 CC-TBT-3(T)代表黄杆菌科一个新属中的一个新种,建议将其命名为 Lutaoense 属的 Sphingomicrobium lutaoense gen. nov.,sp. nov.;模式种为 S. lutoaense,CC-TBT-3(T)(=DSM 24194(T)=CCM 7794(T))。

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