• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过电子顺磁共振和穆斯堡尔光谱学鉴定甘氨酰基自由基酶苄基琥珀酸合酶中的 FeS 簇。

Identification of FeS clusters in the glycyl-radical enzyme benzylsuccinate synthase via EPR and Mössbauer spectroscopy.

机构信息

Laboratorium für Mikrobielle Biochemie, Philipps-Universität Marburg, Karl-von-Frisch-Strasse 8, 35043 Marburg, Germany.

出版信息

J Biol Inorg Chem. 2012 Jan;17(1):49-56. doi: 10.1007/s00775-011-0828-1. Epub 2011 Aug 12.

DOI:10.1007/s00775-011-0828-1
PMID:21837540
Abstract

The anaerobic degradation pathway of toluene is initiated by the addition of the methyl group of toluene to the double bond of fumarate. This reaction is catalyzed by a novel glycyl-radical enzyme, (R)-benzylsuccinate synthase (BSS). The enzyme consists of three subunits, α, β, and γ, and differs from most other glycyl-radical enzymes in having additional cofactors. We have purified a Strep-tagged nonactivated BSS from recombinant Escherichia coli and identified the additional cofactors as FeS clusters by UV/vis, EPR, and Mössbauer spectroscopy. Analysis of the metal content as well as the EPR and Mössbauer spectra indicated that BSS contains magnetically coupled low-potential [4Fe-4S] clusters. Several enzyme preparations showed differing amounts of [3Fe-4S] clusters that could be reconstituted to [4Fe-4S] clusters, indicating that they arise from partial decay of the initial [4Fe-4S] clusters. The most likely location of these FeS clusters in the enzyme are the small β and γ subunits, which are unique for the BSS subfamily of glycyl-radical enzymes and contain conserved cysteines as potential ligands.

摘要

甲苯的厌氧降解途径是由甲苯的甲基基团添加到延胡索酸的双键上启动的。该反应由一种新型甘氨酰基自由基酶(R)-苄基琥珀酸合酶(BSS)催化。该酶由三个亚基α、β和γ组成,与大多数其他甘氨酰基自由基酶不同,它具有额外的辅因子。我们从重组大肠杆菌中纯化了一个带有 Strep 标签的非激活 BSS,并通过紫外/可见、EPR 和穆斯堡尔光谱鉴定了额外的辅因子为 FeS 簇。金属含量分析以及 EPR 和穆斯堡尔光谱表明,BSS 含有磁耦合的低电位[4Fe-4S]簇。一些酶制剂显示出不同数量的[3Fe-4S]簇,这些簇可以重新组成[4Fe-4S]簇,表明它们是初始[4Fe-4S]簇部分衰变的结果。这些 FeS 簇在酶中的最可能位置是小的β和γ亚基,它们是 BSS 亚家族甘氨酰基自由基酶所特有的,并且包含保守的半胱氨酸作为潜在的配体。

相似文献

1
Identification of FeS clusters in the glycyl-radical enzyme benzylsuccinate synthase via EPR and Mössbauer spectroscopy.通过电子顺磁共振和穆斯堡尔光谱学鉴定甘氨酰基自由基酶苄基琥珀酸合酶中的 FeS 簇。
J Biol Inorg Chem. 2012 Jan;17(1):49-56. doi: 10.1007/s00775-011-0828-1. Epub 2011 Aug 12.
2
Subunit structure of benzylsuccinate synthase.苄基琥珀酸合酶的亚基结构。
Biochemistry. 2009 Feb 17;48(6):1284-92. doi: 10.1021/bi801766g.
3
Characterization of MOCS1A, an oxygen-sensitive iron-sulfur protein involved in human molybdenum cofactor biosynthesis.MOCS1A的特性研究,MOCS1A是一种参与人类钼辅因子生物合成的氧敏感型铁硫蛋白。
J Biol Chem. 2004 Aug 13;279(33):34721-32. doi: 10.1074/jbc.M313398200. Epub 2004 Jun 4.
4
Biochemical and genetic characterization of benzylsuccinate synthase from Thauera aromatica: a new glycyl radical enzyme catalysing the first step in anaerobic toluene metabolism.芳香陶厄氏菌中苄基琥珀酸合酶的生化及遗传特性:一种催化厌氧甲苯代谢第一步反应的新型甘氨酰自由基酶
Mol Microbiol. 1998 May;28(3):615-28. doi: 10.1046/j.1365-2958.1998.00826.x.
5
Structures of benzylsuccinate synthase elucidate roles of accessory subunits in glycyl radical enzyme activation and activity.苯丁烯二酸合酶的结构阐明了辅助亚基在甘氨酰基自由基酶激活和活性中的作用。
Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10161-6. doi: 10.1073/pnas.1405983111. Epub 2014 Jun 30.
6
Substrate specificities and electron paramagnetic resonance properties of benzylsuccinate synthases in anaerobic toluene and m-xylene metabolism.厌氧甲苯和间二甲苯代谢中苄基琥珀酸合酶的底物特异性和电子顺磁共振特性
Arch Microbiol. 2004 Feb;181(2):155-62. doi: 10.1007/s00203-003-0642-4. Epub 2003 Dec 20.
7
Structure and Function of Benzylsuccinate Synthase and Related Fumarate-Adding Glycyl Radical Enzymes.苄基琥珀酸合酶及相关加富马酸甘氨酰自由基酶的结构与功能
J Mol Microbiol Biotechnol. 2016;26(1-3):29-44. doi: 10.1159/000441656. Epub 2016 Mar 10.
8
Iron-sulfur interconversions in the anaerobic ribonucleotide reductase from Escherichia coli.来自大肠杆菌的厌氧核糖核苷酸还原酶中的铁硫相互转化。
J Biol Inorg Chem. 1999 Oct;4(5):614-20. doi: 10.1007/s007750050385.
9
Role of the [2Fe-2S] cluster in recombinant Escherichia coli biotin synthase.[2Fe-2S]簇在重组大肠杆菌生物素合酶中的作用。
Biochemistry. 2004 Feb 24;43(7):2022-31. doi: 10.1021/bi035666v.
10
[2Fe-2S] to [4Fe-4S] cluster conversion in Escherichia coli biotin synthase.大肠杆菌生物素合成酶中[2Fe-2S]到[4Fe-4S]簇的转化
Biochemistry. 1997 Sep 30;36(39):11811-20. doi: 10.1021/bi9706430.

引用本文的文献

1
Modeling the Initiation Phase of the Catalytic Cycle in the Glycyl-Radical Enzyme Benzylsuccinate Synthase.模拟甘氨酰自由基酶苄基琥珀酸合成酶催化循环的起始阶段。
J Phys Chem B. 2024 Jun 20;128(24):5823-5839. doi: 10.1021/acs.jpcb.4c01237. Epub 2024 Jun 7.
2
Development of an method for activation of X-succinate synthases for fumarate hydroalkylation.一种用于富马酸氢烷基化的X-琥珀酸合酶激活方法的开发。
iScience. 2023 May 19;26(6):106902. doi: 10.1016/j.isci.2023.106902. eCollection 2023 Jun 16.
3
Benzylsuccinate Synthase is Post-Transcriptionally Regulated in the Toluene-Degrading Denitrifier sp. Strain 15-1.

本文引用的文献

1
Subunit structure of benzylsuccinate synthase.苄基琥珀酸合酶的亚基结构。
Biochemistry. 2009 Feb 17;48(6):1284-92. doi: 10.1021/bi801766g.
2
The Radical SAM Superfamily.自由基S-腺苷甲硫氨酸超家族
Crit Rev Biochem Mol Biol. 2008 Jan-Feb;43(1):63-88. doi: 10.1080/10409230701829169.
3
Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1.编码反硝化细菌菌株HxN1中用于厌氧激活正构烷烃的候选酶的基因。
在甲苯降解反硝化菌菌株15-1中,苄基琥珀酸合酶受到转录后调控。
Microorganisms. 2020 May 7;8(5):681. doi: 10.3390/microorganisms8050681.
4
Modeling of the Reaction Mechanism of Enzymatic Radical C-C Coupling by Benzylsuccinate Synthase.苄基琥珀酸合酶催化的酶促自由基碳-碳偶联反应机制的建模
Int J Mol Sci. 2016 Apr 7;17(4):514. doi: 10.3390/ijms17040514.
5
The ferredoxin-like domain of the activating enzyme is required for generating a lasting glycyl radical in 4-hydroxyphenylacetate decarboxylase.激活酶的铁氧化还原蛋白样结构域是在4-羟基苯乙酸脱羧酶中产生持久甘氨酰自由基所必需的。
J Biol Inorg Chem. 2014 Dec;19(8):1317-26. doi: 10.1007/s00775-014-1189-3. Epub 2014 Aug 26.
6
Structures of benzylsuccinate synthase elucidate roles of accessory subunits in glycyl radical enzyme activation and activity.苯丁烯二酸合酶的结构阐明了辅助亚基在甘氨酰基自由基酶激活和活性中的作用。
Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10161-6. doi: 10.1073/pnas.1405983111. Epub 2014 Jun 30.
7
Glycyl radical activating enzymes: structure, mechanism, and substrate interactions.糖基自由基激活酶:结构、机制和底物相互作用。
Arch Biochem Biophys. 2014 Mar 15;546:64-71. doi: 10.1016/j.abb.2014.01.020. Epub 2014 Jan 31.
8
Radical S-adenosylmethionine enzymes.自由基S-腺苷甲硫氨酸酶
Chem Rev. 2014 Apr 23;114(8):4229-317. doi: 10.1021/cr4004709. Epub 2014 Jan 29.
9
4-Hydroxyphenylacetate decarboxylase activating enzyme catalyses a classical S-adenosylmethionine reductive cleavage reaction.4-羟苯基乙酰乙酸脱羧酶激活酶催化一个典型的 S-腺苷甲硫氨酸还原裂解反应。
J Biol Inorg Chem. 2013 Aug;18(6):633-43. doi: 10.1007/s00775-013-1008-2. Epub 2013 May 29.
10
Isolation and characterization of the small subunit of the uptake hydrogenase from the cyanobacterium Nostoc punctiforme.从蓝藻鱼腥藻中分离和表征摄取氢化酶的小亚基。
J Biol Chem. 2013 Jun 21;288(25):18345-52. doi: 10.1074/jbc.M113.468587. Epub 2013 May 6.
Environ Microbiol. 2008 Feb;10(2):376-85. doi: 10.1111/j.1462-2920.2007.01458.x. Epub 2007 Oct 24.
4
Adding handles to unhandy substrates: anaerobic hydrocarbon activation mechanisms.为不便处理的底物添加“把手”:厌氧烃活化机制
Curr Opin Chem Biol. 2007 Apr;11(2):188-94. doi: 10.1016/j.cbpa.2007.02.027. Epub 2007 Mar 8.
5
Benzylsuccinate Formation as a Means of Anaerobic Toluene Activation by Sulfate-Reducing Strain PRTOL1.苯甲琥珀酸酯的形成作为硫酸盐还原菌 PRTOL1 厌氧激活甲苯的一种手段。
Appl Environ Microbiol. 1997 Sep;63(9):3729-31. doi: 10.1128/aem.63.9.3729-3731.1997.
6
New glycyl radical enzymes catalysing key metabolic steps in anaerobic bacteria.催化厌氧细菌关键代谢步骤的新型甘氨酰自由基酶。
Biol Chem. 2005 Oct;386(10):981-8. doi: 10.1515/BC.2005.114.
7
Mechanism of benzylsuccinate synthase: stereochemistry of toluene addition to fumarate and maleate.苄基琥珀酸合酶的作用机制:甲苯加成到富马酸酯和马来酸酯上的立体化学
J Am Chem Soc. 2005 Jun 22;127(24):8608-9. doi: 10.1021/ja051972f.
8
Spectroscopic approaches to elucidating novel iron-sulfur chemistry in the "radical-Sam" protein superfamily.用于阐明“自由基-Sam”蛋白质超家族中新型铁硫化学的光谱学方法。
Inorg Chem. 2005 Feb 21;44(4):727-41. doi: 10.1021/ic0484811.
9
C-C bond formation and cleavage in radical enzymes, a theoretical perspective.自由基酶中碳-碳键的形成与断裂:理论视角
Biochim Biophys Acta. 2005 Feb 25;1707(1):24-33. doi: 10.1016/j.bbabio.2004.04.006.
10
Subunit composition of the glycyl radical enzyme p-hydroxyphenylacetate decarboxylase. A small subunit, HpdC, is essential for catalytic activity.甘氨酰自由基酶对羟基苯乙酸脱羧酶的亚基组成。一个小亚基HpdC对催化活性至关重要。
Eur J Biochem. 2004 Jun;271(11):2225-30. doi: 10.1111/j.1432-1033.2004.04152.x.