鉴定具有新型调控和代谢基因的高氯酸盐还原基因组岛。
Identification of a perchlorate reduction genomic island with novel regulatory and metabolic genes.
机构信息
Department of Plant and Microbial Biology, 271 Koshland Hall, University of California, Berkeley, Berkeley, CA 94720, USA.
出版信息
Appl Environ Microbiol. 2011 Oct;77(20):7401-4. doi: 10.1128/AEM.05758-11. Epub 2011 Aug 19.
Abstract
A comparative analysis of the genomes of four dissimilatory (per)chlorate-reducing bacteria has revealed a genomic island associated with perchlorate reduction. In addition to the characterized metabolic genes for perchlorate reductase and chlorite dismutase, the island contains multiple conserved uncharacterized genes possibly involved in electron transport and regulation.
摘要
对四种异化（亚）氯酸盐还原菌的基因组进行比较分析，揭示了一个与亚氯酸盐还原相关的基因组岛。除了已鉴定的亚氯酸盐还原酶和亚氯酸歧化酶的代谢基因外，该岛还包含多个可能参与电子传递和调控的保守未鉴定基因。
相似文献
1
Identification of a perchlorate reduction genomic island with novel regulatory and metabolic genes.鉴定具有新型调控和代谢基因的高氯酸盐还原基因组岛。
Appl Environ Microbiol. 2011 Oct;77(20):7401-4. doi: 10.1128/AEM.05758-11. Epub 2011 Aug 19.
2
Physiological and genetic description of dissimilatory perchlorate reduction by the novel marine bacterium Arcobacter sp. strain CAB.新型海洋细菌 Arcobacter sp. 菌株 CAB 异化高氯酸盐还原的生理和遗传描述。
mBio. 2013 May 21;4(3):e00217-13. doi: 10.1128/mBio.00217-13.
3
The horizontal gene transfer of perchlorate reduction genomic island in three bacteria from an ecological niche.三株生态位细菌中高氯酸盐还原基因岛的水平基因转移。
Appl Microbiol Biotechnol. 2024 Dec;108(1):22. doi: 10.1007/s00253-023-12827-3. Epub 2023 Dec 30.
4
Identification, characterization, and classification of genes encoding perchlorate reductase.编码高氯酸盐还原酶的基因的鉴定、表征及分类。
J Bacteriol. 2005 Aug;187(15):5090-6. doi: 10.1128/JB.187.15.5090-5096.2005.
5
Structure and evolution of chlorate reduction composite transposons.氯酸盐还原复合转座子的结构与演化。
mBio. 2013 Aug 6;4(4):e00379-13. doi: 10.1128/mBio.00379-13.
6
Quantitative detection of perchlorate-reducing bacteria by real-time PCR targeting the perchlorate reductase gene.通过针对高氯酸盐还原酶基因的实时聚合酶链反应对高氯酸盐还原菌进行定量检测。
Appl Environ Microbiol. 2008 Mar;74(6):1941-4. doi: 10.1128/AEM.01658-07. Epub 2008 Feb 1.
7
(Per)chlorate-reducing bacteria can utilize aerobic and anaerobic pathways of aromatic degradation with (per)chlorate as an electron acceptor.（过）氯酸盐还原菌能够利用以（过）氯酸盐作为电子受体的好氧和厌氧芳香族降解途径。
mBio. 2015 Mar 24;6(2):e02287-14. doi: 10.1128/mBio.02287-14.
8
Transposon and deletion mutagenesis of genes involved in perchlorate reduction in Azospira suillum PS.猪螺菌Azospira suillum PS中参与高氯酸盐还原的基因的转座子诱变和缺失诱变。
mBio. 2013 Dec 31;5(1):e00769-13. doi: 10.1128/mBio.00769-13.
9
An uncharacterized clade in the DMSO reductase family of molybdenum oxidoreductases is a new type of chlorate reductase.一种在 DMSO 还原酶家族中的未被描述的分支是一种新型的氯酸盐还原酶。
Environ Microbiol Rep. 2020 Oct;12(5):534-539. doi: 10.1111/1758-2229.12869. Epub 2020 Aug 10.
10
The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer.高氯酸盐还原基因岛：水平基因转移的进化机制与途径
BMC Genomics. 2015 Oct 26;16:862. doi: 10.1186/s12864-015-2011-5.
引用本文的文献
1
Raiding nature's genetic toolbox for UV-C resistance by functional metagenomics.通过功能宏基因组学挖掘大自然的抗紫外线C遗传工具箱。
Sci Rep. 2025 Jan 2;15(1):223. doi: 10.1038/s41598-024-83952-w.
2
Metagenomic profiling of halites from the Atacama Desert: an extreme environment with natural perchlorate does not promote high diversity of perchlorate reducing microorganisms.对来自阿塔卡马沙漠的盐类进行宏基因组分析：富含自然高氯酸盐的极端环境并不促进高氯酸盐还原微生物的多样性。
Extremophiles. 2024 Apr 25;28(2):25. doi: 10.1007/s00792-024-01342-6.
3
The horizontal gene transfer of perchlorate reduction genomic island in three bacteria from an ecological niche.三株生态位细菌中高氯酸盐还原基因岛的水平基因转移。
Appl Microbiol Biotechnol. 2024 Dec;108(1):22. doi: 10.1007/s00253-023-12827-3. Epub 2023 Dec 30.
4
Integration of molecular and computational approaches paints a holistic portrait of obscure metabolisms.分子和计算方法的结合描绘了一幅模糊代谢的整体图景。
mBio. 2023 Dec 19;14(6):e0043123. doi: 10.1128/mbio.00431-23. Epub 2023 Oct 19.
5
Chlorine redox chemistry is widespread in microbiology.氯的氧化还原化学在微生物学中很普遍。
ISME J. 2023 Jan;17(1):70-83. doi: 10.1038/s41396-022-01317-5. Epub 2022 Oct 6.
6
Genetic and phylogenetic analysis of dissimilatory iodate-reducing bacteria identifies potential niches across the world's oceans.异化碘酸盐还原菌的遗传和系统发育分析确定了全球海洋中的潜在生态位。
ISME J. 2022 Jan;16(1):38-49. doi: 10.1038/s41396-021-01034-5. Epub 2021 Jul 2.
7
A Multiplex Immunosensor for Detecting Perchlorate-Reducing Bacteria for Environmental Monitoring and Planetary Exploration.一种用于环境监测和行星探索的检测高氯酸盐还原菌的多重免疫传感器。
Front Microbiol. 2020 Dec 16;11:590736. doi: 10.3389/fmicb.2020.590736. eCollection 2020.
8
Can Halophilic and Psychrophilic Microorganisms Modify the Freezing/Melting Curve of Cold Salty Solutions? Implications for Mars Habitability.嗜盐菌和嗜冷菌能否改变冰冷咸溶液的冻结/融化曲线？对火星可居住性的影响。
Astrobiology. 2020 Sep;20(9):1067-1075. doi: 10.1089/ast.2019.2094. Epub 2020 Aug 20.
9
Heterologous expression of the gene for chlorite dismutase from Ideonella dechloratans is induced by an FNR-type transcription factor.异源表达绿脓假单胞菌氯酸盐还原酶基因受 FNR 型转录因子诱导。
Microbiologyopen. 2020 Jul;9(7):e1049. doi: 10.1002/mbo3.1049. Epub 2020 Apr 22.
10
Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria.重复的水平基因转移引发了趋磁细菌两个进化分支的趋磁行为的平行进化。
ISME J. 2020 Jul;14(7):1783-1794. doi: 10.1038/s41396-020-0647-x. Epub 2020 Apr 15.
本文引用的文献
1
Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides.通过一种在 Dehalococcoides 中常见的机制实现氯乙烯呼吸岛的位点特异性动员。
BMC Genomics. 2011 Jun 2;12:287. doi: 10.1186/1471-2164-12-287.
2
XerCD-mediated site-specific recombination leads to loss of the 57-kilobase gonococcal genetic island.XerCD 介导的位点特异性重组导致 57 千碱基淋病奈瑟氏菌遗传岛的缺失。
J Bacteriol. 2011 Jan;193(2):377-88. doi: 10.1128/JB.00948-10. Epub 2010 Nov 12.
3
Magnetospirillum bellicus sp. nov., a novel dissimilatory perchlorate-reducing alphaproteobacterium isolated from a bioelectrical reactor.贝氏磁螺菌，一种新型的异化高氯酸盐还原的α-变形菌，从生物电化学反应堆中分离得到。
Appl Environ Microbiol. 2010 Jul;76(14):4730-7. doi: 10.1128/AEM.00015-10. Epub 2010 May 21.
4
Discovery of natural perchlorate in the Antarctic Dry Valleys and its global implications.南极干谷中自然存在高氯酸盐的发现及其全球意义。
Environ Sci Technol. 2010 Apr 1;44(7):2360-4. doi: 10.1021/es9033606.
5
Genomic islands: tools of bacterial horizontal gene transfer and evolution.基因组岛：细菌水平基因转移与进化的工具
FEMS Microbiol Rev. 2009 Mar;33(2):376-93. doi: 10.1111/j.1574-6976.2008.00136.x. Epub 2008 Oct 29.
6
IslandViewer: an integrated interface for computational identification and visualization of genomic islands.IslandViewer：用于基因组岛的计算识别与可视化的集成界面。
Bioinformatics. 2009 Mar 1;25(5):664-5. doi: 10.1093/bioinformatics/btp030. Epub 2009 Jan 16.
7
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.HAMAP：一个包含完全测序的微生物蛋白质组集以及UniProtKB/Swiss-Prot中经人工整理的微生物蛋白质家族的数据库。
Nucleic Acids Res. 2009 Jan;37(Database issue):D471-8. doi: 10.1093/nar/gkn661. Epub 2008 Oct 11.
8
Perchlorate and nitrate in leafy vegetables of North America.北美绿叶蔬菜中的高氯酸盐和硝酸盐。
Environ Sci Technol. 2005 Dec 15;39(24):9391-7. doi: 10.1021/es050804k.
9
Dynamic analysis of a genomic island in Magnetospirillum sp. strain AMB-1 reveals how magnetosome synthesis developed.嗜磁螺菌AMB-1菌株中一个基因组岛的动态分析揭示了磁小体合成的发展过程。
FEBS Lett. 2006 Feb 6;580(3):801-12. doi: 10.1016/j.febslet.2006.01.003. Epub 2006 Jan 10.
10
Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes.虚拟足迹与PRODORIC：一种用于原核生物调控子预测的整合框架。
Bioinformatics. 2005 Nov 15;21(22):4187-9. doi: 10.1093/bioinformatics/bti635. Epub 2005 Aug 18.
Zotero 插件