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重复的水平基因转移引发了趋磁细菌两个进化分支的趋磁行为的平行进化。

Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria.

机构信息

Aix-Marseille University, CEA, CNRS, Biosciences and Biotechnologies Institute of Aix-Marseille, Saint Paul lez Durance, France.

Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.

出版信息

ISME J. 2020 Jul;14(7):1783-1794. doi: 10.1038/s41396-020-0647-x. Epub 2020 Apr 15.

Abstract

Under the same selection pressures, two genetically divergent populations may evolve in parallel toward the same adaptive solutions. Here, we hypothesized that magnetotaxis (i.e., magnetically guided chemotaxis) represents a key adaptation to micro-oxic habitats in aquatic sediments and that its parallel evolution homogenized the phenotypes of two evolutionary divergent clusters of freshwater spirilla. All magnetotactic bacteria affiliated to the Magnetospirillum genus (Alphaproteobacteria class) biomineralize the same magnetic particle chains and share highly similar physiological and ultrastructural features. We looked for the processes that could have contributed at shaping such an evolutionary pattern by reconciling species and gene trees using newly sequenced genomes of Magnetospirillum related bacteria. We showed that repeated horizontal gene transfers and homologous recombination of entire operons contributed to the parallel evolution of magnetotaxis. We propose that such processes could represent a more parsimonious and rapid solution for adaptation compared with independent and repeated de novo mutations, especially in the case of traits as complex as magnetotaxis involving tens of interacting proteins. Besides strengthening the idea about the importance of such a function in micro-oxic habitats, these results reinforce previous observations in experimental evolution suggesting that gene flow could alleviate clonal interference and speed up adaptation under some circumstances.

摘要

在相同的选择压力下,两个遗传上有差异的种群可能会朝着相同的适应性解决方案平行进化。在这里,我们假设趋磁(即受磁场引导的趋化性)代表了水生沉积物中微缺氧生境的关键适应,并假设其平行进化使两种进化上不同的淡水螺旋菌簇的表型同质化。所有属于磁螺旋菌属(α变形菌纲)的趋磁细菌都生物矿化相同的磁性颗粒链,并具有高度相似的生理和超微结构特征。我们通过使用新测序的相关磁螺旋菌的基因组来协调种和基因树,以寻找可能有助于形成这种进化模式的过程。我们表明,整个操纵子的水平基因转移和同源重组有助于趋磁的平行进化。我们提出,与独立和重复的从头突变相比,这种过程可能代表了一种更简单、更快速的适应解决方案,特别是对于涉及数十个相互作用蛋白的复杂性状,如趋磁。除了加强趋磁在微缺氧生境中的重要性的观点外,这些结果还强化了实验进化中的先前观察结果,表明基因流可以在某些情况下减轻克隆干扰并加速适应。

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