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本文引用的文献

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Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.利用计算预测改进基于文献的基因本体论注释:一项可行性研究。
Database (Oxford). 2011 Mar 15;2011:bar004. doi: 10.1093/database/bar004. Print 2011.
2
Oropharyngeal cancer incidence trends: diminishing racial disparities.口咽癌发病率趋势:种族差异逐渐缩小。
Cancer Causes Control. 2011 May;22(5):753-63. doi: 10.1007/s10552-011-9748-1. Epub 2011 Mar 5.
3
Oral malignant tumours: a report on 728 cases in Chile.
Acta Odontol Latinoam. 2010;23(2):136-42.
4
Ontology and the future of dental research informatics.本体论与牙科研究信息学的未来。
J Am Dent Assoc. 2010 Oct;141(10):1173-5. doi: 10.14219/jada.archive.2010.0031.
5
Alcohol consumption and cancers of the oral cavity and pharynx from 1988 to 2009: an update.1988 年至 2009 年期间的酒精消费与口腔和咽癌:更新。
Eur J Cancer Prev. 2010 Nov;19(6):431-65. doi: 10.1097/CEJ.0b013e32833d936d.
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Saliva Ontology: an ontology-based framework for a Salivaomics Knowledge Base.唾液本体论:基于本体的唾液组学知识库框架。
BMC Bioinformatics. 2010 Jun 3;11:302. doi: 10.1186/1471-2105-11-302.
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A meta-analysis of alcohol drinking and oral and pharyngeal cancers. Part 1: overall results and dose-risk relation.饮酒与口咽癌的荟萃分析。第 1 部分:总体结果和剂量-风险关系。
Oral Oncol. 2010 Jul;46(7):497-503. doi: 10.1016/j.oraloncology.2010.03.024. Epub 2010 May 4.
8
The ACGT Master Ontology and its applications--towards an ontology-driven cancer research and management system.ACGT 大师本体及其应用——迈向本体驱动的癌症研究和管理系统。
J Biomed Inform. 2011 Feb;44(1):8-25. doi: 10.1016/j.jbi.2010.04.008. Epub 2010 May 11.
9
QuickGO: a user tutorial for the web-based Gene Ontology browser.QuickGO:基于网络的基因本体浏览器用户指南
Database (Oxford). 2009;2009:bap010. doi: 10.1093/database/bap010. Epub 2009 Sep 29.
10
Oral cancer over four decades: epidemiology, trends, histology, and survival by anatomical sites.四十余年来的口腔癌:按解剖部位的流行病学、趋势、组织学和生存情况。
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定义口腔癌的挑战:本体论方法分析

The challenges of defining oral cancer: analysis of an ontological approach.

作者信息

Tapia Jose Luis, Goldberg Louis J

机构信息

Department of Oral Diagnostic Sciences, School of Dental Medicine, University at Buffalo, 355 Squire Hall, 3435 Main Street, Buffalo, NY 14214, USA.

出版信息

Head Neck Pathol. 2011 Dec;5(4):376-84. doi: 10.1007/s12105-011-0300-0. Epub 2011 Sep 14.

DOI:10.1007/s12105-011-0300-0
PMID:21915705
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3210219/
Abstract

An important inconsistency currently exists in the literature on oral cancer. Reviewing this literature, one finds that the term oral cancer is defined and described with great variation. In a search in PubMed, at least 17 different terms were found for titles of papers reporting data on oral cancer. The variability of the terms used for designating anatomic regions and type of malignant neoplasms for reporting oral cancer has hampered the ability of researchers to effectively retrieve information concerning oral cancer. Therefore, it is sometimes extremely difficult to provide meaningful comparisons among various studies of oral cancer. Recently, a new ontological strategy that is rooted in consensus-based controlled vocabularies has been proposed to improve the consistency of data in dental research (Smith et al. in J Am Dent Assoc 141:1173-1175, 2010). In this paper, we analyzed the terminology dilemma on oral cancer and explained the current situation. We proposed a possible solution to the dilemma using an ontology-based approach. The advantages for applying this strategy are also discussed.

摘要

目前,口腔癌领域的文献存在一个重要的不一致性问题。在回顾这些文献时,人们发现“口腔癌”这一术语的定义和描述存在很大差异。在PubMed数据库中进行搜索时,发现至少有17种不同的术语用于报道口腔癌数据的论文标题。用于指定口腔癌报告中解剖区域和恶性肿瘤类型的术语的变异性,阻碍了研究人员有效检索有关口腔癌信息的能力。因此,有时很难在各种口腔癌研究之间进行有意义的比较。最近,有人提出了一种基于共识控制词汇的新本体策略,以提高牙科研究数据的一致性(Smith等人,《美国牙科协会杂志》,2010年,第141卷,第1173 - 1175页)。在本文中,我们分析了口腔癌术语的困境并解释了当前情况。我们提出了一种基于本体的方法来解决这一困境。还讨论了应用该策略的优点。