Laboratoire Evolution et Diversité Biologique - EDB, Université de Toulouse, UPS, 118 route de Narbonne, F-31062, Toulouse, France.
Mol Ecol Resour. 2012 Jan;12(1):136-41. doi: 10.1111/j.1755-0998.2011.03073.x. Epub 2011 Sep 22.
DNA barcoding projects require high-throughput generation of sequence data to assemble the comprehensive reference databases that are required to perform large-scale biodiversity inventories and molecular ecology studies. With the advent of new sequencing technologies, the extraction step, which often requires a considerable amount of time and money, represents a significant bottleneck in many studies. Here, we present a one-step Chelex double-stranded DNA extraction protocol that is quick, cheap, easy and works with a small quantity of ethanol-stored tissue. We developed this protocol by removing the denaturation step appearing in classic methods. This modification reduces the number of handling steps to one, thus simplifying the extraction procedure and reducing the risk of sample contamination, and yields double-stranded DNA instead of the single-stranded form that classical Chelex extraction protocols usually release. DNA obtained through our method is then suitable for long-term conservation (over 1.5 years). We tested our protocol on a highly diverse genus of spiders comprised of mainly very small species. We also apply the method to two other genera of spiders, one with average size species, the other one with giant species, to test the efficacy of the method with varying amounts of input tissue. We also discuss the advantages and limitations of this DNA extraction technique when working with arthropods.
DNA 条形码项目需要高通量生成序列数据,以组装全面的参考数据库,从而进行大规模生物多样性清查和分子生态学研究。随着新测序技术的出现,提取步骤通常需要大量的时间和金钱,这成为许多研究的一个重要瓶颈。在这里,我们提出了一种一步 Chelex 双链 DNA 提取方案,该方案快速、廉价、简单,并且适用于少量乙醇储存的组织。我们通过去除经典方法中出现的变性步骤来开发这种方案。这种改进将处理步骤的数量减少到一步,从而简化了提取过程,并降低了样品污染的风险,同时产生双链 DNA,而不是经典 Chelex 提取方案通常释放的单链形式。通过我们的方法获得的 DNA 然后适合长期保存(超过 1.5 年)。我们在一个主要由非常小的物种组成的高度多样化的蜘蛛属上测试了我们的方案。我们还将该方法应用于另外两个蜘蛛属,一个属的物种大小适中,另一个属的物种较大,以测试该方法在不同数量的输入组织时的效果。我们还讨论了在处理节肢动物时这种 DNA 提取技术的优势和局限性。