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使用酿酒酵母衰老寿命模型研究年龄依赖性基因组不稳定性。

Studying age-dependent genomic instability using the S. cerevisiae chronological lifespan model.

作者信息

Wei Min, Madia Federica, Longo Valter D

机构信息

Andrus Gerontology Center, Department of Biological Sciences, University of Southern California, Los Angeles, USA.

出版信息

J Vis Exp. 2011 Sep 29(55):3030. doi: 10.3791/3030.

DOI:10.3791/3030
PMID:21989366
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3230202/
Abstract

Studies using the Saccharomyces cerevisiae aging model have uncovered life span regulatory pathways that are partially conserved in higher eukaryotes. The simplicity and power of the yeast aging model can also be explored to study DNA damage and genome maintenance as well as their contributions to diseases during aging. Here, we describe a system to study age-dependent DNA mutations, including base substitutions, frame-shift mutations, gross chromosomal rearrangements, and homologous/homeologous recombination, as well as nuclear DNA repair activity by combining the yeast chronological life span with simple DNA damage and mutation assays. The methods described here should facilitate the identification of genes/pathways that regulate genomic instability and the mechanisms that underlie age-dependent DNA mutations and cancer in mammals.

摘要

利用酿酒酵母衰老模型开展的研究揭示了在高等真核生物中部分保守的寿命调控途径。酵母衰老模型的简易性和实用性还可用于研究DNA损伤与基因组维持,以及它们在衰老过程中对疾病的影响。在此,我们描述了一个用于研究年龄依赖性DNA突变的系统,包括碱基替换、移码突变、染色体大片段重排以及同源/异源重组,还可通过将酵母时序寿命与简单的DNA损伤和突变检测相结合来研究核DNA修复活性。本文所述方法应有助于鉴定调控基因组不稳定的基因/途径,以及哺乳动物中年龄依赖性DNA突变和癌症背后的机制。

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Studying age-dependent genomic instability using the S. cerevisiae chronological lifespan model.使用酿酒酵母衰老寿命模型研究年龄依赖性基因组不稳定性。
J Vis Exp. 2011 Sep 29(55):3030. doi: 10.3791/3030.
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3
Growth conditions that increase or decrease lifespan in Saccharomyces cerevisiae lead to corresponding decreases or increases in rates of interstitial deletions and non-reciprocal translocations.在酿酒酵母中,增加或减少寿命的生长条件会导致间隙缺失和非相互易位发生率相应地降低或增加。
BMC Genet. 2016 Oct 21;17(1):140. doi: 10.1186/s12863-016-0447-5.
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Assessing chronological aging in Saccharomyces cerevisiae.评估酿酒酵母的自然衰老
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Genomic instability is associated with natural life span variation in Saccharomyces cerevisiae.基因组不稳定性与酿酒酵母的自然寿命变化有关。
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Tethering telomerase to telomeres increases genome instability and promotes chronological aging in yeast.将端粒酶拴系到端粒上会增加基因组不稳定性,并促进酵母的时序性衰老。
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引用本文的文献

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Diverse conditions support near-zero growth in yeast: Implications for the study of cell lifespan.多种条件支持酵母近乎零增长:对细胞寿命研究的启示。
Microb Cell. 2019 Aug 20;6(9):397-413. doi: 10.15698/mic2019.09.690.
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Yeast longevity promoted by reversing aging-associated decline in heavy isotope content.通过逆转与衰老相关的重同位素含量下降来促进酵母寿命延长。
NPJ Aging Mech Dis. 2016 Feb 18;2:16004. doi: 10.1038/npjamd.2016.4. eCollection 2016.
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Tethering telomerase to telomeres increases genome instability and promotes chronological aging in yeast.

本文引用的文献

1
Extending healthy life span--from yeast to humans.延长健康寿命——从酵母到人类。
Science. 2010 Apr 16;328(5976):321-6. doi: 10.1126/science.1172539.
2
Oncogene homologue Sch9 promotes age-dependent mutations by a superoxide and Rev1/Polzeta-dependent mechanism.癌基因同源物Sch9通过超氧化物和Rev1/Polzeta依赖性机制促进年龄依赖性突变。
J Cell Biol. 2009 Aug 24;186(4):509-23. doi: 10.1083/jcb.200906011. Epub 2009 Aug 17.
3
Tor1/Sch9-regulated carbon source substitution is as effective as calorie restriction in life span extension.
将端粒酶拴系到端粒上会增加基因组不稳定性,并促进酵母的时序性衰老。
Aging (Albany NY). 2016 Nov 13;8(11):2827-2847. doi: 10.18632/aging.101095.
4
Gene-nutrient interaction markedly influences yeast chronological lifespan.基因与营养的相互作用显著影响酵母的衰老时间。
Exp Gerontol. 2016 Dec 15;86:113-123. doi: 10.1016/j.exger.2016.04.012. Epub 2016 Apr 25.
5
Oxidative stress and programmed cell death in yeast.酵母中的氧化应激和程序性细胞死亡。
Front Oncol. 2012 Jun 20;2:64. doi: 10.3389/fonc.2012.00064. eCollection 2012.
Tor1/Sch9调控的碳源替代在延长寿命方面与热量限制同样有效。
PLoS Genet. 2009 May;5(5):e1000467. doi: 10.1371/journal.pgen.1000467. Epub 2009 May 8.
4
Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9.通过限制热量摄入来延长寿命取决于Rim15以及Ras/PKA、Tor和Sch9下游的转录因子。
PLoS Genet. 2008 Jan;4(1):e13. doi: 10.1371/journal.pgen.0040013. Epub 2007 Dec 13.
5
Longevity mutation in SCH9 prevents recombination errors and premature genomic instability in a Werner/Bloom model system.SCH9中的长寿突变可防止Werner/Bloom模型系统中的重组错误和过早的基因组不稳定。
J Cell Biol. 2008 Jan 14;180(1):67-81. doi: 10.1083/jcb.200707154.
6
A simple model system for age-dependent DNA damage and cancer.一个用于研究年龄依赖性DNA损伤与癌症的简单模型系统。
Mech Ageing Dev. 2007 Jan;128(1):45-9. doi: 10.1016/j.mad.2006.11.009. Epub 2006 Nov 21.
7
Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures.从酵母稳定期培养物中分离静止和非静止细胞。
J Cell Biol. 2006 Jul 3;174(1):89-100. doi: 10.1083/jcb.200604072.
8
Controlled expression of recombinant genes and preparation of cell-free extracts in yeast.
Methods Mol Biol. 2006;313:317-31. doi: 10.1385/1-59259-958-3:317.
9
Superoxide is a mediator of an altruistic aging program in Saccharomyces cerevisiae.超氧化物是酿酒酵母中一种利他性衰老程序的介质。
J Cell Biol. 2004 Sep 27;166(7):1055-67. doi: 10.1083/jcb.200404002.
10
Chronological aging-independent replicative life span regulation by Msn2/Msn4 and Sod2 in Saccharomyces cerevisiae.酿酒酵母中Msn2/Msn4和Sod2对与时间顺序衰老无关的复制寿命的调控
FEBS Lett. 2004 Jan 16;557(1-3):136-42. doi: 10.1016/s0014-5793(03)01462-5.