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负载诱导的信号转导网络调节。

Load-induced modulation of signal transduction networks.

机构信息

Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109-0606, USA.

出版信息

Sci Signal. 2011 Oct 11;4(194):ra67. doi: 10.1126/scisignal.2002152.

Abstract

Biological signal transduction networks are commonly viewed as circuits that pass along information--in the process amplifying signals, enhancing sensitivity, or performing other signal-processing tasks--to transcriptional and other components. Here, we report on a "reverse-causality" phenomenon, which we call load-induced modulation. Through a combination of analytical and experimental tools, we discovered that signaling was modulated, in a surprising way, by downstream targets that receive the signal and, in doing so, apply what in physics is called a load. Specifically, we found that non-intuitive changes in response dynamics occurred for a covalent modification cycle when load was present. Loading altered the response time of a system, depending on whether the activity of one of the enzymes was maximal and the other was operating at its minimal rate or whether both enzymes were operating at submaximal rates. These two conditions, which we call "limit regime" and "intermediate regime," were associated with increased or decreased response times, respectively. The bandwidth, the range of frequency in which the system can process information, decreased in the presence of load, suggesting that downstream targets participate in establishing a balance between noise-filtering capabilities and a circuit's ability to process high-frequency stimulation. Nodes in a signaling network are not independent relay devices, but rather are modulated by their downstream targets.

摘要

生物信号转导网络通常被视为传递信息的电路——在此过程中,信号被放大、增强灵敏度或执行其他信号处理任务——传递到转录和其他元件。在这里,我们报告了一种“反向因果关系”现象,我们称之为负载诱导调节。通过分析和实验工具的结合,我们发现信号以一种令人惊讶的方式被下游靶标调节,这些靶标接收信号,并在这样做的过程中施加了物理学中所谓的负载。具体来说,我们发现当存在负载时,共价修饰循环的响应动力学发生了非直观的变化。负载改变了系统的响应时间,具体取决于其中一种酶的活性是否达到最大值,而另一种酶是否以最小速率运行,或者两种酶是否都以亚最大速率运行。这两种情况,我们分别称之为“极限状态”和“中间状态”,分别与响应时间的增加或减少有关。在存在负载的情况下,带宽(系统能够处理信息的频率范围)减小,这表明下游靶标参与了在噪声过滤能力和电路处理高频刺激的能力之间建立平衡。信号网络中的节点不是独立的中继设备,而是被其下游靶标调节。

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本文引用的文献

1
Substrate-dependent control of MAPK phosphorylation in vivo.
Mol Syst Biol. 2011 Feb 1;7:467. doi: 10.1038/msb.2010.121.
2
Fan-out in gene regulatory networks.
J Biol Eng. 2010 Dec 17;4:16. doi: 10.1186/1754-1611-4-16.
3
Signalling ballet in space and time.
Nat Rev Mol Cell Biol. 2010 Jun;11(6):414-26. doi: 10.1038/nrm2901.
4
Signaling properties of a covalent modification cycle are altered by a downstream target.
Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10032-7. doi: 10.1073/pnas.0913815107. Epub 2010 May 17.
5
MAPK substrate competition integrates patterning signals in the Drosophila embryo.
Curr Biol. 2010 Mar 9;20(5):446-51. doi: 10.1016/j.cub.2010.01.019. Epub 2010 Feb 18.
7
Understanding modularity in molecular networks requires dynamics.
Sci Signal. 2009 Jul 28;2(81):pe44. doi: 10.1126/scisignal.281pe44.
8
Spontaneous reaction silencing in metabolic optimization.
PLoS Comput Biol. 2008 Dec;4(12):e1000236. doi: 10.1371/journal.pcbi.1000236. Epub 2008 Dec 5.
9
Signal processing by the HOG MAP kinase pathway.
Proc Natl Acad Sci U S A. 2008 May 20;105(20):7165-70. doi: 10.1073/pnas.0710770105. Epub 2008 May 14.
10
A hidden feedback in signaling cascades is revealed.
PLoS Comput Biol. 2008 Mar 21;4(3):e1000041. doi: 10.1371/journal.pcbi.1000041.

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