Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
ISME J. 2012 Mar;6(3):619-28. doi: 10.1038/ismej.2011.146. Epub 2011 Oct 20.
Marine cyanobacteria of the genera Prochlorococcus and Synechococcus are the most abundant photosynthetic prokaryotes in oceanic environments, and are key contributors to global CO(2) fixation, chlorophyll biomass and primary production. Cyanophages, viruses infecting cyanobacteria, are a major force in the ecology of their hosts. These phages contribute greatly to cyanobacterial mortality, therefore acting as a powerful selective force upon their hosts. Phage reproduction is based on utilization of the host transcription and translation mechanisms; therefore, differences in the G+C genomic content between cyanophages and their hosts could be a limiting factor for the translation of cyanophage genes. On the basis of comprehensive genomic analyses conducted in this study, we suggest that cyanophages of the Myoviridae family, which can infect both Prochlorococcus and Synechococcus, overcome this limitation by carrying additional sets of tRNAs in their genomes accommodating AT-rich codons. Whereas the tRNA genes are less needed when infecting their Prochlorococcus hosts, which possess a similar G+C content to the cyanophage, the additional tRNAs may increase the overall translational efficiency of their genes when infecting a Synechococcus host (with high G+C content), therefore potentially enabling the infection of multiple hosts.
海洋中的聚球藻属和聚光光合菌属是最丰富的光合原核生物,是全球 CO2 固定、叶绿素生物量和初级生产力的主要贡献者。感染蓝藻的噬藻体是其宿主生态系统的主要力量。这些噬菌体极大地促进了蓝藻的死亡率,因此对其宿主起到了强大的选择作用。噬菌体的繁殖依赖于宿主转录和翻译机制的利用;因此,噬藻体和其宿主之间的 G+C 基因组含量的差异可能是噬藻体基因翻译的限制因素。基于本研究进行的综合基因组分析,我们认为可以感染聚球藻属和聚光光合菌属的肌尾噬菌体家族的噬藻体通过在其基因组中携带额外的 tRNA 来克服这一限制,这些 tRNA 可以容纳富含 AT 的密码子。虽然在感染具有与噬藻体相似 G+C 含量的聚球藻属宿主时,tRNA 基因的需求较少,但在感染具有高 G+C 含量的聚光光合菌属宿主时,额外的 tRNA 可能会提高其基因的整体翻译效率,从而可能实现对多种宿主的感染。