Dept Molecular Biology, MV Lomonosov Moscow State University, 119991 Moscow, Russia.
Eur J Protistol. 2012 Aug;48(3):185-93. doi: 10.1016/j.ejop.2011.09.002. Epub 2011 Oct 19.
Mitochondrial ND8 gene is pan-edited in most known trypanosomatid species and 5'-edited only in a few trypanosomatid species. In this work, the ND8 nucleotide sequences from three species of insect trypanosomatids ("Wallaceina" sp. Wsd, Leptomonas rigidus and Leptomonas collosoma) were obtained and compared with previously known ND8 cryptogene sequences and mature mRNA sequences from other trypanosomatid species. We found a new pattern of editing: only 18 U residues are inserted in the 5' region of the primary transcript in all investigated species and the potential start codon is encoded on the DNA level. This is the first case when a pre-edited ND8 sequence is found to contain a putative ORF. Previously, a 5'-edited ND8 cryptogene was known only from Strigomonas oncopelti, but it contained only about half of the ORF and no start codon. Here we present the ND8 gene sequence from Angomonas deanei which has similar cryptogene structure. We also show that according to 18S rRNA phylogenetic analysis, the species with the encoded ORF group together and so do species with the 5'-edited and pan-edited forms of the gene. This result sheds light on the evolution of cryptogene structure which involved multiple events of editing domain length reduction.
线粒体 ND8 基因在大多数已知的鞭毛虫物种中被广泛编辑,而在少数鞭毛虫物种中仅在 5'端被编辑。在这项工作中,我们获得了三种昆虫鞭毛虫("Wallaceina" sp. Wsd、Leptomonas rigidus 和 Leptomonas collosoma)的 ND8 核苷酸序列,并与先前已知的 ND8 隐匿基因序列和其他鞭毛虫物种的成熟 mRNA 序列进行了比较。我们发现了一种新的编辑模式:在所有研究的物种中,初级转录本的 5'区域仅插入 18 个 U 残基,潜在的起始密码子在 DNA 水平上编码。这是首次在预编辑的 ND8 序列中发现假定的 ORF。以前,仅在 Strigomonas oncopelti 中已知存在 5'编辑的 ND8 隐匿基因,但它仅包含大约一半的 ORF 且没有起始密码子。在这里,我们展示了来自 Angomonas deanei 的 ND8 基因序列,其隐匿基因结构相似。我们还表明,根据 18S rRNA 系统发育分析,具有编码 ORF 的物种聚集在一起,具有 5'编辑和广泛编辑形式的基因的物种也聚集在一起。这一结果揭示了隐匿基因结构的进化,涉及多次编辑域长度减少事件。