Centre for Integrative Bioinformatics, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Appl Environ Microbiol. 2012 Jan;78(1):134-43. doi: 10.1128/AEM.05276-11. Epub 2011 Oct 21.
Knowledge of how the activity of enzymes is affected under in vivo conditions is essential for analyzing their regulation and constructing models that yield an integrated understanding of cell behavior. Current kinetic parameters for Lactococcus lactis are scattered through different studies and performed under different assay conditions. Furthermore, assay conditions often diverge from conditions prevailing in the intracellular environment. To establish uniform assay conditions that resemble intracellular conditions, we analyzed the intracellular composition of anaerobic glucose-limited chemostat cultures of L. lactis subsp. cremoris MG 1363. Based on this, we designed a new assay medium for enzyme activity measurements of growing cells of L. lactis, mimicking as closely as practically possible its intracellular environment. Procedures were optimized to be carried out in 96-well plates, and the reproducibility and dynamic range were checked for all enzyme activity measurements. The effects of freezing and the carryover of ammonium sulfate from the addition of coupling enzymes were also established. Activities of all 10 glycolytic and 4 fermentative enzymes were measured. Remarkably, most in vivo-like activities were lower than previously published data. Yet, the ratios of V(max) over measured in vivo fluxes were above 1. With this work, we have developed and extensively validated standard protocols for enzyme activity measurements for L. lactis.
了解酶的活性在体内条件下是如何受到影响的,对于分析它们的调节作用以及构建能够综合理解细胞行为的模型至关重要。目前关于乳酸乳球菌的动力学参数分散在不同的研究中,并且是在不同的测定条件下进行的。此外,测定条件往往与细胞内环境中的条件存在差异。为了建立类似于细胞内环境的统一测定条件,我们分析了厌氧葡萄糖限制恒化培养物中乳酸乳球菌乳亚种 MG1363 的细胞内组成。基于此,我们设计了一种用于乳酸乳球菌生长细胞酶活性测量的新测定培养基,尽可能地模拟其细胞内环境。优化了在 96 孔板中进行的程序,并检查了所有酶活性测量的重现性和动态范围。还确定了冷冻和添加偶联酶时硫酸铵的携带的影响。测量了 10 种糖酵解酶和 4 种发酵酶的所有活性。值得注意的是,大多数类似于体内的活性低于之前发表的数据。然而,测量的体内通量的 V(max)与活性的比值均高于 1。通过这项工作,我们已经开发并广泛验证了用于乳酸乳球菌酶活性测量的标准方案。