Valentine J S, Sheridan R P, Allen L C, Kahn P C
Proc Natl Acad Sci U S A. 1979 Mar;76(3):1009-13. doi: 10.1073/pnas.76.3.1009.
In all heme proteins for which crystal structures are available, the N(epsilon) of a histidyl residue is bonded to the heme iron and N(delta) is hydrogen bonded to a carbonyl oxygen of the peptide backbone. We investigate here the possibility that a change in oxidation state of the iron or a change in the geometry of this hydrogen bond might change the hydrogen bond strength in a functionally significant way. Dimerization energies obtained from ab initio molecular orbital calculations on the hydrogen-bonded dimer of imidazole and planar formamide are used to represent the strength of this hydrogen bond in heme proteins. The effect of a change in iron oxidation state is modeled by varying the positive charge on imidazole. The effect of a change in hydrogen bond geometry is studied by employing x-ray coordinates for reduced and oxidized cytochrome c, deoxy- and metmyoglobin, and deoxy- and methemoglobin. Our conclusions are that the strength of this hydrogen bond in heme proteins is sensitive to both the oxidation state of the iron atom and to geometry changes on the order of those obtained from the x-ray coordinates. We speculate that the changes in oxidation state may be functionally coupled with changes in hydrogen bond geometry and that this hydrogen bond represents a feasible pathway to link protein conformation with redox potential or reactivity of the iron atom.
在所有已获得晶体结构的血红素蛋白中,组氨酸残基的N(ε)与血红素铁相连,N(δ)与肽主链的羰基氧形成氢键。我们在此研究铁的氧化态变化或该氢键几何结构的变化是否可能以功能上显著的方式改变氢键强度。通过对咪唑和平面甲酰胺的氢键二聚体进行从头算分子轨道计算得到的二聚化能,用于表示血红素蛋白中该氢键的强度。通过改变咪唑上的正电荷来模拟铁氧化态变化的影响。利用还原态和氧化态细胞色素c、脱氧肌红蛋白和高铁肌红蛋白以及脱氧血红蛋白和高铁血红蛋白的x射线坐标,研究氢键几何结构变化的影响。我们的结论是,血红素蛋白中该氢键的强度对铁原子的氧化态以及从x射线坐标获得的那种量级的几何结构变化都很敏感。我们推测氧化态的变化可能在功能上与氢键几何结构的变化相关联,并且该氢键代表了一种将蛋白质构象与铁原子的氧化还原电位或反应性联系起来的可行途径。