Peterson E S, Friedman J M, Chien E Y, Sligar S G
Department of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Biochemistry. 1998 Sep 1;37(35):12301-19. doi: 10.1021/bi980752u.
Resonance Raman spectra have been obtained for both the equilibrium deoxy derivative and the 10 ns photoproduct of the CO derivative of several mutants of sperm whale myoglobin. The particular mutations on the F-helix were chosen to expose the role of the proximal hydrogen-bonding network in maintaining the position of the heme, the proximal histidine, and the heme-7-propionate. In each mutant, one or more hydrogen bonds are altered or eliminated. A careful comparison of the spectra from the equilibrium and transient five coordinate species indicates that the tertiary relaxation after photodissociation is nearly complete within 10 ns, as is the case in the WT protein. The iron-proximal histidine stretching mode (nu(Fe-His)) and several low-frequency propionate-sensitive modes in the Raman spectra reveal the impact of specific disruptions in the hydrogen-bonding network on the heme pocket geometry. Two categories of perturbation are observed with respect to nu(Fe-His): (1) a shift in the peak frequency without a change in line shape and (2) changes in the overall line shape which may or may not be accompanied by a frequency shift. The alterations in the nu(Fe-His) band are interpreted as arising from conformational heterogeneity and local geometrical changes within the pocket, including movement of the heme group, and are discussed in terms of changes in the population distribution as revealed via a curve-fitting analysis. None of the frequency shifts in the nu(Fe-His) band are as large as that reported for the His93Gly(imidazole) mutant, suggesting that the covalent linkage between the heme and His93 plays a crucial role in maintaining the geometry of the proximal pocket. Molecular modeling indicates that the nu(Fe-His) frequency shifts observed in the present study originate from changes in the His93 imidazole ring azimuthal angle. The systematic variations in the interactions of the heme-7-propionate in the mutants have exposed several properties of the propionate-sensitive Raman bands. The frequencies of nu9 (the 240 cm-1 shoulder on the nu(Fe-His) band) and delta(cbetacccd) at approximately 370 cm-1 appear to be correlated. A decrease in hydrogen-bond strength to this propionate in response to changes in stereochemistry or degree of disorder is associated with a decrease in the frequency of both nu9 and delta(cbetacccd). The mutations that cause a weakening of the hydrogen bonding to the heme-7-propionate also result in changes in nu(Fe-His) which are interpreted as evidence that this propionate participates in the anchoring of the heme within the heme pocket. Changes in gamma7 at approximately 300 cm-1, gamma6 at approximately 335 cm-1, and nu8 at approximately 342 cm-1 are discussed in terms of pocket disorder. A titration from pH 5.1 to 7.4 suggests that His97 is protonated in the WT protein by pH 5.1. Geminate-rebinding studies on these mutants indicate that disruption of the hydrogen-bonding network has only modest effects on ligand-binding kinetics, suggesting that the role of the hydrogen-bonding network may be one of maintaining heme pocket stability rather than of specific protein function.
已获得抹香鲸肌红蛋白几种突变体的一氧化碳衍生物的平衡脱氧衍生物和10纳秒光产物的共振拉曼光谱。选择F螺旋上的特定突变来揭示近端氢键网络在维持血红素、近端组氨酸和血红素-7-丙酸酯位置方面的作用。在每个突变体中,一个或多个氢键被改变或消除。对平衡态和瞬态五配位物种的光谱进行仔细比较表明,光解离后的三级弛豫在10纳秒内几乎完成,野生型蛋白的情况也是如此。拉曼光谱中的铁-近端组氨酸伸缩模式(ν(Fe-His))和几种低频丙酸酯敏感模式揭示了氢键网络中特定破坏对血红素口袋几何形状的影响。关于ν(Fe-His)观察到两类扰动:(1)峰频率的移动而线形不变,(2)整体线形的变化,可能伴有或不伴有频率移动。ν(Fe-His)带的变化被解释为源于口袋内的构象异质性和局部几何变化,包括血红素基团的移动,并根据通过曲线拟合分析揭示的种群分布变化进行了讨论。ν(Fe-His)带中的频率移动都没有His93Gly(咪唑)突变体报道的那么大,这表明血红素与His93之间的共价键在维持近端口袋的几何形状方面起着关键作用。分子模型表明,本研究中观察到的ν(Fe-His)频率移动源于His93咪唑环方位角的变化。突变体中血红素-7-丙酸酯相互作用的系统变化揭示了丙酸酯敏感拉曼带的几个特性。ν9(ν(Fe-His)带240厘米-1处的肩峰)和约370厘米-1处的δ(ββγγδδ)的频率似乎相关。由于立体化学或无序程度的变化导致与该丙酸酯氢键强度的降低与ν9和δ(ββγγδδ)频率的降低相关。导致与血红素-7-丙酸酯氢键减弱的突变也会导致ν(Fe-His)的变化,这被解释为该丙酸酯参与血红素在血红素口袋内锚定的证据。约300厘米-1处的γ7、约335厘米-1处的γ6和约342厘米-1处的ν8的变化根据口袋无序进行了讨论。从pH 5.1到7.4的滴定表明,野生型蛋白中的His97在pH 5.1时被质子化。对这些突变体的双分子重结合研究表明,氢键网络的破坏对配体结合动力学只有适度影响,这表明氢键网络的作用可能是维持血红素口袋稳定性而不是特定的蛋白质功能。