• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

理想:具有广泛注释和文献的无序蛋白质。

IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature.

机构信息

Faculty of Engineering, Maebashi Institute of Technology, Maebashi, Gunma 371-0816, Japan.

出版信息

Nucleic Acids Res. 2012 Jan;40(Database issue):D507-11. doi: 10.1093/nar/gkr884. Epub 2011 Nov 8.

DOI:10.1093/nar/gkr884
PMID:22067451
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3245138/
Abstract

IDEAL, Intrinsically Disordered proteins with Extensive Annotations and Literature (http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/), is a collection of knowledge on experimentally verified intrinsically disordered proteins. IDEAL contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments. In particular, IDEAL explicitly describes protean segments that can be transformed from a disordered state to an ordered state. Since in most cases they can act as molecular recognition elements upon binding of partner proteins, IDEAL provides a data resource for functional regions of intrinsically disordered proteins. The information in IDEAL is provided on a user-friendly graphical view and in a computer-friendly XML format.

摘要

IDEAL,即具有广泛注释和文献的内在无序蛋白质(http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/),是一个经过实验验证的内在无序蛋白质知识库。IDEAL 包含由管理员手动注释的内在无序区域、与其他分子的相互作用区域、翻译后修饰位点、参考文献和结构域分配。特别是,IDEAL 明确描述了可以从无序状态转变为有序状态的蛋白质片段。由于在大多数情况下,它们可以在与伴侣蛋白结合时充当分子识别元件,因此 IDEAL 为内在无序蛋白质的功能区域提供了数据资源。IDEAL 中的信息以用户友好的图形视图和计算机友好的 XML 格式提供。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4a3/3245138/f9ccc10f64dc/gkr884f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4a3/3245138/f9ccc10f64dc/gkr884f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4a3/3245138/f9ccc10f64dc/gkr884f1.jpg

相似文献

1
IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature.理想:具有广泛注释和文献的无序蛋白质。
Nucleic Acids Res. 2012 Jan;40(Database issue):D507-11. doi: 10.1093/nar/gkr884. Epub 2011 Nov 8.
2
IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners.IDEAL 在 2014 年展示了由固有无序蛋白及其结合伴侣组成的相互作用网络。
Nucleic Acids Res. 2014 Jan;42(Database issue):D320-5. doi: 10.1093/nar/gkt1010. Epub 2013 Oct 30.
3
DisBind: A database of classified functional binding sites in disordered and structured regions of intrinsically disordered proteins.DisBind:一个关于内在无序蛋白质无序和结构化区域中分类功能结合位点的数据库。
BMC Bioinformatics. 2017 Apr 5;18(1):206. doi: 10.1186/s12859-017-1620-1.
4
MobiDB: intrinsically disordered proteins in 2021.MobiDB:2021 年无规卷曲蛋白
Nucleic Acids Res. 2021 Jan 8;49(D1):D361-D367. doi: 10.1093/nar/gkaa1058.
5
The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.2009年的GTOP数据库:更新内容及新特性,以拓展和深化对蛋白质结构与功能的认识。
Nucleic Acids Res. 2009 Jan;37(Database issue):D333-7. doi: 10.1093/nar/gkn855. Epub 2008 Nov 4.
6
Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt.利用 DisProt 探索天然无序蛋白质的人工注释
Curr Protoc Bioinformatics. 2020 Dec;72(1):e107. doi: 10.1002/cpbi.107.
7
Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.内在无序的功能选集。3. 配体、翻译后修饰以及与内在无序蛋白质相关的疾病。
J Proteome Res. 2007 May;6(5):1917-32. doi: 10.1021/pr060394e. Epub 2007 Mar 29.
8
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.MobiDB 2.0:一个关于内在无序和可移动蛋白质的改进数据库。
Nucleic Acids Res. 2015 Jan;43(Database issue):D315-20. doi: 10.1093/nar/gku982. Epub 2014 Oct 31.
9
MobiDB: 10 years of intrinsically disordered proteins.MobiDB:10 年的无序蛋白质。
Nucleic Acids Res. 2023 Jan 6;51(D1):D438-D444. doi: 10.1093/nar/gkac1065.
10
DisProt: the Database of Disordered Proteins.DisProt:无序蛋白质数据库。
Nucleic Acids Res. 2007 Jan;35(Database issue):D786-93. doi: 10.1093/nar/gkl893. Epub 2006 Dec 1.

引用本文的文献

1
Proteome solubility is differentially reshaped by thermal stress and regulators of ubiquitination.蛋白质组的溶解度因热应激和泛素化调节剂而发生不同程度的重塑。
J Biol Chem. 2025 Jul 24;301(9):110517. doi: 10.1016/j.jbc.2025.110517.
2
Use of AI-methods over MD simulations in the sampling of conformational ensembles in IDPs.在内在无序蛋白质构象集合采样中,人工智能方法相较于分子动力学模拟的应用。
Front Mol Biosci. 2025 Apr 8;12:1542267. doi: 10.3389/fmolb.2025.1542267. eCollection 2025.
3
Searching and Using MobiDB Resource 6 to Explore Predictions and Annotations for Intrinsically Disordered Proteins.

本文引用的文献

1
Binary classification of protein molecules into intrinsically disordered and ordered segments.将蛋白质分子二元分类为内在无序片段和有序片段。
BMC Struct Biol. 2011 Jun 22;11:29. doi: 10.1186/1472-6807-11-29.
2
CDD: a Conserved Domain Database for the functional annotation of proteins.CDD:一个用于蛋白质功能注释的保守结构域数据库。
Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9. doi: 10.1093/nar/gkq1189. Epub 2010 Nov 24.
3
The RCSB Protein Data Bank: redesigned web site and web services.RCSB蛋白质数据库:重新设计的网站和网络服务。
搜索并使用MobiDB资源6来探索内在无序蛋白质的预测和注释。
Curr Protoc. 2024 Dec;4(12):e70077. doi: 10.1002/cpz1.70077.
4
StrIDR: a database of intrinsically disordered regions of proteins with experimentally resolved structures.StrIDR:一个具有实验解析结构的蛋白质内在无序区域数据库。
bioRxiv. 2024 Aug 26:2024.08.22.609111. doi: 10.1101/2024.08.22.609111.
5
Computational Methods to Predict Intrinsically Disordered Regions and Functional Regions in Them.计算方法预测蛋白质内无序区及其功能区。
Methods Mol Biol. 2023;2627:231-245. doi: 10.1007/978-1-0716-2974-1_13.
6
Computational prediction of disordered binding regions.无序结合区域的计算预测
Comput Struct Biotechnol J. 2023 Feb 10;21:1487-1497. doi: 10.1016/j.csbj.2023.02.018. eCollection 2023.
7
How AlphaFold2 Predicts Conditionally Folding Regions Annotated in an Intrinsically Disordered Protein Database, IDEAL.AlphaFold2如何预测在内在无序蛋白质数据库IDEAL中注释的条件折叠区域。
Biology (Basel). 2023 Jan 25;12(2):182. doi: 10.3390/biology12020182.
8
Molecular Dynamics Simulation as a Tool to Identify Mutual Synergistic Folding Proteins.分子动力学模拟作为一种识别相互协同折叠蛋白质的工具。
Int J Mol Sci. 2023 Jan 16;24(2):1790. doi: 10.3390/ijms24021790.
9
Dynamic structures of intrinsically disordered proteins related to the general transcription factor TFIIH, nucleosomes, and histone chaperones.与通用转录因子TFIIH、核小体和组蛋白伴侣相关的内在无序蛋白质的动态结构。
Biophys Rev. 2022 Nov 18;14(6):1449-1472. doi: 10.1007/s12551-022-01014-9. eCollection 2022 Dec.
10
Myofilament-associated proteins with intrinsic disorder (MAPIDs) and their resolution by computational modeling.肌球蛋白相关具有内在无序性的蛋白(MAPIDs)及其通过计算建模的解析。
Q Rev Biophys. 2023 Jan 11;56:e2. doi: 10.1017/S003358352300001X.
Nucleic Acids Res. 2011 Jan;39(Database issue):D392-401. doi: 10.1093/nar/gkq1021. Epub 2010 Oct 29.
4
Understanding protein non-folding.理解蛋白质的非折叠状态。
Biochim Biophys Acta. 2010 Jun;1804(6):1231-64. doi: 10.1016/j.bbapap.2010.01.017. Epub 2010 Feb 1.
5
The Pfam protein families database.Pfam 蛋白质家族数据库。
Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22. doi: 10.1093/nar/gkp985. Epub 2009 Nov 17.
6
ELM: the status of the 2010 eukaryotic linear motif resource.ELM:2010 年真核线性基序资源的现状。
Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. doi: 10.1093/nar/gkp1016. Epub 2009 Nov 17.
7
The Universal Protein Resource (UniProt) in 2010.2010 年的通用蛋白质资源(UniProt)。
Nucleic Acids Res. 2010 Jan;38(Database issue):D142-8. doi: 10.1093/nar/gkp846. Epub 2009 Oct 20.
8
Close encounters of the third kind: disordered domains and the interactions of proteins.第三类亲密接触:无序结构域与蛋白质相互作用
Bioessays. 2009 Mar;31(3):328-35. doi: 10.1002/bies.200800151.
9
Data growth and its impact on the SCOP database: new developments.数据增长及其对SCOP数据库的影响:新进展
Nucleic Acids Res. 2008 Jan;36(Database issue):D419-25. doi: 10.1093/nar/gkm993. Epub 2007 Nov 13.
10
DisProt: the Database of Disordered Proteins.DisProt:无序蛋白质数据库。
Nucleic Acids Res. 2007 Jan;35(Database issue):D786-93. doi: 10.1093/nar/gkl893. Epub 2006 Dec 1.